Wall clock time and date at job start Mon Mar 30 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47070 * 2 1 4 4 C 1.50696 * 109.46899 * 120.00120 * 2 1 3 5 5 C 1.34666 * 126.59589 * 325.02566 * 4 2 1 6 6 N 1.34121 * 108.02399 * 179.97438 * 5 4 2 7 7 C 1.30504 * 109.25569 * 359.97438 * 6 5 4 8 8 C 1.50700 * 125.64988 * 180.02562 * 7 6 5 9 9 C 1.53008 * 109.47017 * 304.97589 * 8 7 6 10 10 C 1.50700 * 109.47017 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99810 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99870 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00185 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00007 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47442 * 59.99347 * 14 12 10 16 16 H 1.48496 * 109.47346 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46886 * 299.99472 * 14 12 10 18 18 N 1.35039 * 108.70033 * 0.02562 * 7 6 5 19 19 H 0.97003 * 126.39946 * 180.02562 * 18 7 6 20 20 H 1.08995 * 109.47141 * 299.99684 * 1 2 3 21 21 H 1.09001 * 109.47244 * 59.99895 * 1 2 3 22 22 H 1.09002 * 109.47217 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47141 * 240.00316 * 2 1 3 24 24 H 1.09004 * 109.46771 * 59.99880 * 3 2 1 25 25 H 1.08998 * 109.46991 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47173 * 300.00149 * 3 2 1 27 27 H 1.08001 * 125.98583 * 0.02562 * 5 4 2 28 28 H 1.08995 * 109.47313 * 64.97439 * 8 7 6 29 29 H 1.08996 * 109.46964 * 184.97999 * 8 7 6 30 30 H 1.08995 * 109.46956 * 300.00069 * 9 8 7 31 31 H 1.09006 * 109.46870 * 60.00223 * 9 8 7 32 32 H 0.96996 * 120.00019 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.4646 -0.6998 2.4515 6 7 2.2180 -1.4534 3.2660 7 6 3.2309 -1.9310 2.5958 8 6 4.3090 -2.8251 3.1520 9 6 4.9480 -2.1561 4.3707 10 6 6.0256 -3.0505 4.9273 11 1 6.2342 -4.0008 4.4585 12 6 6.7453 -2.6556 6.0350 13 7 6.4917 -1.4981 6.6056 14 14 8.0816 -3.7639 6.7245 15 1 9.1182 -3.9941 5.6865 16 1 8.7017 -3.1146 7.9074 17 1 7.4874 -5.0638 7.1276 18 7 3.1529 -1.4914 1.3214 19 1 3.7744 -1.6920 0.6042 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 0.5605 -0.1769 2.7266 28 1 3.8728 -3.7791 3.4483 29 1 5.0696 -2.9944 2.3900 30 1 5.3841 -1.2022 4.0744 31 1 4.1873 -1.9868 5.1329 32 1 6.9982 -1.2201 7.3847 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259981080.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:05 Heat of formation + Delta-G solvation = 24.693675 kcal Electronic energy + Delta-G solvation = -13129.970851 eV Core-core repulsion = 10897.351681 eV Total energy + Delta-G solvation = -2232.619170 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.66530 -35.64282 -33.70526 -32.00657 -31.38133 -27.76210 -27.20056 -24.96052 -22.48835 -21.59056 -20.34727 -18.95704 -17.18689 -16.16097 -14.93095 -14.47331 -14.35528 -14.22536 -13.60435 -13.09025 -12.84592 -12.60889 -12.23776 -12.09505 -11.51203 -11.27953 -11.09462 -11.02135 -10.90196 -10.61019 -9.96127 -9.62313 -9.49661 -9.30963 -9.09799 -8.30281 -7.68554 -5.94942 -3.98785 2.46199 3.36054 3.40533 3.42130 3.48958 3.69281 4.49107 4.74972 4.82294 5.07629 5.20869 5.40370 5.42373 5.52648 5.67297 5.72555 5.75545 5.86054 5.94298 6.07636 6.16426 6.40608 6.51137 6.69341 6.93881 7.21702 7.72633 7.83206 7.90239 8.07877 8.42423 8.68806 9.08392 9.64621 11.16119 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.074160 B = 0.005633 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.471425 B = 4969.129237 C = 5006.468778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.014 4.014 3 C -0.144 4.144 4 C -0.046 4.046 5 C -0.021 4.021 6 N -0.488 5.488 7 C 0.237 3.763 8 C -0.033 4.033 9 C 0.034 3.966 10 C -0.525 4.525 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.893 3.107 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.571 5.571 19 H 0.412 0.588 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.160 0.840 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.014 0.986 31 H 0.033 0.967 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 2.804 -14.218 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.160 4.160 5 C -0.170 4.170 6 N -0.206 5.206 7 C -0.026 4.026 8 C -0.072 4.072 9 C -0.004 4.004 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.530 5.530 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 N -0.173 5.173 19 H 0.249 0.751 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.177 0.823 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.863 2.796 -13.195 16.139 hybrid contribution 1.241 -0.401 -0.758 1.509 sum -7.622 2.394 -13.953 16.078 Atomic orbital electron populations 1.21783 0.93733 1.02184 1.02036 1.19436 0.96018 0.94977 0.92910 1.21860 1.01141 0.95120 1.01993 1.21026 0.92548 1.03704 0.98765 1.22004 1.01783 1.03766 0.89417 1.70320 1.04945 1.13391 1.31974 1.24009 0.98227 1.00250 0.80156 1.20360 0.91107 0.95994 0.99731 1.19014 0.95290 0.95311 0.90794 1.21177 1.18291 1.04256 1.12660 0.92630 1.25006 0.97378 0.95151 0.96750 1.69977 1.41030 1.20340 1.21696 0.86649 0.81991 0.80819 0.78460 1.20329 1.21299 1.20173 1.43286 1.22133 1.39743 1.12185 0.75128 0.91952 0.92350 0.92402 0.91223 0.92005 0.92811 0.92418 0.82254 0.90388 0.91963 0.96800 0.94903 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.79 37.16 0.33 -0.95 16 2 C -0.01 -0.15 3.38 -91.77 -0.31 -0.46 16 3 C -0.14 -1.45 9.18 37.16 0.34 -1.11 16 4 C -0.05 -0.68 6.16 -81.60 -0.50 -1.18 16 5 C -0.02 -0.37 11.06 -17.82 -0.20 -0.57 16 6 N -0.49 -10.49 11.21 -10.82 -0.12 -10.61 16 7 C 0.24 4.75 7.43 -155.42 -1.15 3.59 16 8 C -0.03 -0.69 5.78 -27.88 -0.16 -0.85 16 9 C 0.03 0.91 4.93 -27.88 -0.14 0.77 16 10 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 14 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 N -0.57 -9.04 6.15 -6.54 -0.04 -9.08 16 19 H 0.41 5.15 8.96 -40.82 -0.37 4.78 16 20 H 0.06 0.57 7.31 -51.93 -0.38 0.19 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.16 2.37 7.40 -52.49 -0.39 1.98 16 28 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 273.92 15.07 4.13 4.13 Total: -1.00 -32.91 273.92 -7.43 -40.34 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.90 Total: -0.37 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.21 Total: -14.44 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.57 Total: -46.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.91 -7.43 -40.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259981080.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.032 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds