Wall clock time and date at job start Mon Mar 30 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47070 * 2 1 4 4 C 1.50696 * 109.46899 * 120.00120 * 2 1 3 5 5 C 1.34666 * 126.59589 * 325.02566 * 4 2 1 6 6 N 1.34121 * 108.02399 * 179.97438 * 5 4 2 7 7 C 1.30504 * 109.25569 * 359.97438 * 6 5 4 8 8 C 1.50700 * 125.64988 * 180.02562 * 7 6 5 9 9 C 1.53008 * 109.47017 * 304.97589 * 8 7 6 10 10 C 1.50700 * 109.47017 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99810 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99870 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00185 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00007 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47442 * 59.99347 * 14 12 10 16 16 H 1.48496 * 109.47346 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46886 * 299.99472 * 14 12 10 18 18 N 1.35039 * 108.70033 * 0.02562 * 7 6 5 19 19 H 0.97003 * 126.39946 * 180.02562 * 18 7 6 20 20 H 1.08995 * 109.47141 * 299.99684 * 1 2 3 21 21 H 1.09001 * 109.47244 * 59.99895 * 1 2 3 22 22 H 1.09002 * 109.47217 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47141 * 240.00316 * 2 1 3 24 24 H 1.09004 * 109.46771 * 59.99880 * 3 2 1 25 25 H 1.08998 * 109.46991 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47173 * 300.00149 * 3 2 1 27 27 H 1.08001 * 125.98583 * 0.02562 * 5 4 2 28 28 H 1.08995 * 109.47313 * 64.97439 * 8 7 6 29 29 H 1.08996 * 109.46964 * 184.97999 * 8 7 6 30 30 H 1.08995 * 109.46956 * 300.00069 * 9 8 7 31 31 H 1.09006 * 109.46870 * 60.00223 * 9 8 7 32 32 H 0.96996 * 120.00019 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.4646 -0.6998 2.4515 6 7 2.2180 -1.4534 3.2660 7 6 3.2309 -1.9310 2.5958 8 6 4.3090 -2.8251 3.1520 9 6 4.9480 -2.1561 4.3707 10 6 6.0256 -3.0505 4.9273 11 1 6.2342 -4.0008 4.4585 12 6 6.7453 -2.6556 6.0350 13 7 6.4917 -1.4981 6.6056 14 14 8.0816 -3.7639 6.7245 15 1 9.1182 -3.9941 5.6865 16 1 8.7017 -3.1146 7.9074 17 1 7.4874 -5.0638 7.1276 18 7 3.1529 -1.4914 1.3214 19 1 3.7744 -1.6920 0.6042 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 0.5605 -0.1769 2.7266 28 1 3.8728 -3.7791 3.4483 29 1 5.0696 -2.9944 2.3900 30 1 5.3841 -1.2022 4.0744 31 1 4.1873 -1.9868 5.1329 32 1 6.9982 -1.2201 7.3847 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259981080.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:05 Heat of formation + Delta-G solvation = 3.571577 kcal Electronic energy + Delta-G solvation = -13130.886774 eV Core-core repulsion = 10897.351681 eV Total energy + Delta-G solvation = -2233.535093 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.03851 -36.70618 -35.66005 -33.50094 -33.24652 -29.36609 -28.00199 -26.78742 -23.61328 -23.53095 -21.73429 -20.30096 -18.77191 -18.05611 -16.56477 -16.16237 -15.56027 -15.30503 -14.88797 -14.64727 -14.35410 -14.10928 -13.78453 -13.04784 -12.95474 -12.79975 -12.57265 -12.36995 -12.08888 -11.94086 -11.89445 -11.59479 -11.27886 -10.92925 -10.75983 -10.53344 -9.06065 -8.17383 -6.30805 1.12658 1.42395 1.46685 1.54374 2.19788 2.24105 2.44523 3.15684 3.65054 3.90165 3.99587 4.25372 4.29231 4.47541 4.57146 4.69607 4.78723 4.85050 4.89853 5.01984 5.05941 5.17240 5.23078 5.39342 5.48970 5.53912 5.67507 5.84266 5.89811 6.20429 6.56803 6.87280 7.27711 7.38998 8.94748 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.074160 B = 0.005633 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.471425 B = 4969.129237 C = 5006.468778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.012 4.012 3 C -0.142 4.142 4 C -0.014 4.014 5 C -0.055 4.055 6 N -0.533 5.533 7 C 0.206 3.794 8 C -0.018 4.018 9 C 0.044 3.956 10 C -0.544 4.544 11 H 0.071 0.929 12 C -0.003 4.003 13 N -0.937 5.937 14 Si 0.972 3.028 15 H -0.262 1.262 16 H -0.286 1.286 17 H -0.265 1.265 18 N -0.556 5.556 19 H 0.429 0.571 20 H 0.058 0.942 21 H 0.084 0.916 22 H 0.053 0.947 23 H 0.091 0.909 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.177 0.823 28 H 0.079 0.921 29 H 0.088 0.912 30 H -0.018 1.018 31 H -0.010 1.010 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 2.254 -16.346 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.199 4.199 4 C -0.130 4.130 5 C -0.203 4.203 6 N -0.253 5.253 7 C -0.058 4.058 8 C -0.057 4.057 9 C 0.006 3.994 10 C -0.582 4.582 11 H 0.089 0.911 12 C -0.200 4.200 13 N -0.577 5.577 14 Si 0.795 3.205 15 H -0.187 1.187 16 H -0.211 1.211 17 H -0.190 1.190 18 N -0.160 5.160 19 H 0.269 0.731 20 H 0.077 0.923 21 H 0.103 0.897 22 H 0.072 0.928 23 H 0.110 0.890 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.194 0.806 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.001 0.999 31 H 0.008 0.992 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.679 2.231 -15.358 17.781 hybrid contribution 1.098 -0.141 -0.155 1.118 sum -7.581 2.090 -15.513 17.392 Atomic orbital electron populations 1.21789 0.92237 1.02322 1.03208 1.19673 0.97171 0.95006 0.91345 1.21851 1.00524 0.94611 1.02953 1.21735 0.90729 1.01079 0.99498 1.22402 1.02867 1.04775 0.90210 1.70196 1.06223 1.14677 1.34211 1.23532 0.98441 1.01952 0.81883 1.20019 0.91998 0.95631 0.98041 1.18773 0.94081 0.94391 0.92168 1.21663 1.18550 1.04962 1.13056 0.91068 1.26066 1.00149 0.96686 0.97131 1.70146 1.42555 1.22614 1.22335 0.85409 0.78656 0.78617 0.77786 1.18669 1.21146 1.19019 1.43179 1.22555 1.38889 1.11360 0.73077 0.92296 0.89749 0.92812 0.89037 0.93041 0.93788 0.89544 0.80615 0.90257 0.89363 0.99947 0.99178 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.79 71.98 0.63 -1.47 16 2 C -0.01 -0.22 3.38 -11.54 -0.04 -0.26 16 3 C -0.14 -2.47 9.18 71.98 0.66 -1.81 16 4 C -0.01 -0.40 6.16 40.95 0.25 -0.15 16 5 C -0.06 -1.93 11.06 83.52 0.92 -1.01 16 6 N -0.53 -23.62 11.21 -188.14 -2.11 -25.73 16 7 C 0.21 8.33 7.43 138.13 1.03 9.36 16 8 C -0.02 -0.77 5.78 29.85 0.17 -0.59 16 9 C 0.04 2.46 4.93 29.85 0.15 2.61 16 10 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 11 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 12 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 13 N -0.94 -59.33 13.29 21.45 0.28 -59.05 16 14 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 15 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 N -0.56 -16.95 6.15 -174.60 -1.07 -18.02 16 19 H 0.43 9.82 8.96 -92.71 -0.83 8.99 16 20 H 0.06 0.95 7.31 -2.39 -0.02 0.93 16 21 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 27 H 0.18 5.23 7.40 -2.91 -0.02 5.21 16 28 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 29 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 30 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 31 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 32 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -73.63 273.92 3.86 -69.76 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.26 Total: 10.56 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 4.47 Total: -24.24 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -2.90 Total: -102.80 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.63 3.86 -69.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259981080.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.335 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds