Wall clock time and date at job start Mon Mar 30 2020 02:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46929 * 2 1 4 4 C 1.34670 * 125.98446 * 125.00305 * 3 2 1 5 5 N 1.36886 * 106.81588 * 179.97438 * 4 3 2 6 6 C 1.46499 * 126.39806 * 180.02562 * 5 4 3 7 7 C 1.35046 * 107.20501 * 0.25762 * 5 4 3 8 8 C 1.50694 * 125.65115 * 179.71537 * 7 5 4 9 9 C 1.52999 * 109.47293 * 90.00411 * 8 7 5 10 10 C 1.50701 * 109.47186 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99748 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99677 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00163 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46817 * 90.00401 * 14 12 10 16 16 H 1.48507 * 109.46856 * 210.00354 * 14 12 10 17 17 H 1.48501 * 109.47238 * 330.00091 * 14 12 10 18 18 N 1.30502 * 108.69870 * 359.56627 * 7 5 4 19 19 H 1.09001 * 109.47095 * 300.00148 * 1 2 3 20 20 H 1.09000 * 109.47314 * 59.99860 * 1 2 3 21 21 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46793 * 240.00219 * 2 1 3 23 23 H 1.09000 * 109.46803 * 120.00011 * 2 1 3 24 24 H 1.08002 * 126.59581 * 0.03245 * 4 3 2 25 25 H 1.09002 * 109.47391 * 90.02066 * 6 5 4 26 26 H 1.09001 * 109.46813 * 330.02122 * 6 5 4 27 27 H 1.09004 * 109.47041 * 210.02249 * 6 5 4 28 28 H 1.09004 * 109.47077 * 210.00525 * 8 7 5 29 29 H 1.09000 * 109.47155 * 330.00169 * 8 7 5 30 30 H 1.09004 * 109.47152 * 300.00068 * 9 8 7 31 31 H 1.09000 * 109.47218 * 59.99796 * 9 8 7 32 32 H 0.96998 * 119.99885 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8854 1.9585 0.8926 5 7 3.0737 3.2633 0.5241 6 6 3.9250 4.2440 1.2022 7 6 2.3241 3.4792 -0.5783 8 6 2.2187 4.7826 -1.3273 9 6 3.2953 4.8353 -2.4132 10 6 3.1902 6.1389 -3.1619 11 1 2.4313 6.8578 -2.8906 12 6 4.0625 6.4134 -4.1939 13 7 3.9712 7.5513 -4.8469 14 14 5.3747 5.1696 -4.6636 15 1 4.8358 4.2473 -5.6951 16 1 6.5596 5.8814 -5.2064 17 1 5.7718 4.3916 -3.4626 18 7 1.7086 2.3713 -0.8893 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5138 0.8900 24 1 3.3353 1.4565 1.7364 25 1 4.9294 4.2064 0.7806 26 1 3.9688 4.0126 2.2665 27 1 3.5100 5.2424 1.0642 28 1 1.2338 4.8582 -1.7881 29 1 2.3604 5.6122 -0.6347 30 1 4.2802 4.7596 -1.9524 31 1 3.1536 4.0056 -3.1059 32 1 4.5845 7.7443 -5.5731 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260014221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:33 Heat of formation + Delta-G solvation = 16.933098 kcal Electronic energy + Delta-G solvation = -13353.650025 eV Core-core repulsion = 11120.694330 eV Total energy + Delta-G solvation = -2232.955694 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.00699 -36.24015 -35.48705 -33.94366 -33.16351 -29.97716 -27.87928 -26.96637 -24.15366 -22.95653 -21.07936 -20.60744 -18.99953 -17.40739 -16.78065 -16.21619 -15.72151 -15.32090 -14.91727 -14.80403 -14.40845 -14.22069 -13.87693 -13.54034 -13.25429 -12.94456 -12.81683 -12.27056 -12.13064 -11.98519 -11.83498 -11.75721 -11.43408 -10.80359 -10.75197 -10.40265 -9.06125 -8.32543 -6.36493 1.15468 1.31734 1.33455 1.44300 2.00601 2.18055 2.32111 3.02543 3.54783 3.92589 3.98953 4.27742 4.34436 4.37928 4.41246 4.55494 4.61031 4.69525 4.80789 4.88279 4.93251 5.09107 5.27507 5.29300 5.36127 5.42862 5.55091 5.58576 5.96924 6.23038 6.33806 6.70356 7.28087 7.29027 8.83753 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.038543 B = 0.007674 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.292513 B = 3647.605222 C = 3836.653047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 C -0.032 4.032 4 C -0.058 4.058 5 N -0.459 5.459 6 C 0.064 3.936 7 C 0.199 3.801 8 C -0.013 4.013 9 C 0.008 3.992 10 C -0.530 4.530 11 H 0.043 0.957 12 C 0.013 3.987 13 N -0.945 5.945 14 Si 0.944 3.056 15 H -0.273 1.273 16 H -0.277 1.277 17 H -0.255 1.255 18 N -0.528 5.528 19 H 0.048 0.952 20 H 0.033 0.967 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.211 0.789 25 H 0.079 0.921 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.018 0.982 31 H 0.005 0.995 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -13.137 15.133 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.161 4.161 4 C -0.190 4.190 5 N -0.140 5.140 6 C -0.077 4.077 7 C -0.064 4.064 8 C -0.052 4.052 9 C -0.031 4.031 10 C -0.568 4.568 11 H 0.062 0.938 12 C -0.185 4.185 13 N -0.585 5.585 14 Si 0.768 3.232 15 H -0.199 1.199 16 H -0.202 1.202 17 H -0.179 1.179 18 N -0.248 5.248 19 H 0.067 0.933 20 H 0.053 0.947 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.120 0.880 24 H 0.228 0.772 25 H 0.098 0.902 26 H 0.137 0.863 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.037 0.963 31 H 0.023 0.977 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.044 -13.021 14.435 19.440 hybrid contribution 0.977 0.218 -0.140 1.010 sum 1.020 -12.803 14.295 19.217 Atomic orbital electron populations 1.21598 0.94980 1.01864 1.00987 1.19856 0.96049 0.88056 1.03083 1.21330 1.01982 0.97747 0.95054 1.22997 1.06271 0.84622 1.05156 1.45501 1.35026 1.11191 1.22321 1.22327 0.94280 0.91855 0.99236 1.23462 0.95540 0.97393 0.90002 1.19806 1.00705 0.88703 0.95962 1.19337 0.94701 0.95083 0.93946 1.21366 1.16445 1.02556 1.16397 0.93836 1.25854 0.99765 0.97044 0.95803 1.70035 1.39650 1.25349 1.23460 0.85754 0.78899 0.79243 0.79282 1.19886 1.20187 1.17876 1.70053 1.26592 0.99926 1.28265 0.93296 0.94729 0.90562 0.91733 0.88029 0.77220 0.90244 0.86335 0.89274 0.90942 0.89741 0.96349 0.97697 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.88 71.98 0.71 -2.44 16 2 C -0.03 -0.76 6.50 29.85 0.19 -0.57 16 3 C -0.03 -1.01 6.36 41.39 0.26 -0.75 16 4 C -0.06 -1.53 11.46 83.09 0.95 -0.58 16 5 N -0.46 -13.77 3.15 -537.60 -1.69 -15.46 16 6 C 0.06 1.36 10.98 127.77 1.40 2.76 16 7 C 0.20 7.64 7.16 138.13 0.99 8.63 16 8 C -0.01 -0.53 5.46 29.85 0.16 -0.36 16 9 C 0.01 0.38 4.02 29.85 0.12 0.50 16 10 C -0.53 -30.75 9.66 25.60 0.25 -30.50 16 11 H 0.04 2.72 7.99 -2.91 -0.02 2.70 16 12 C 0.01 0.77 5.47 84.66 0.46 1.23 16 13 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 14 Si 0.94 45.56 27.47 68.60 1.88 47.44 16 15 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.25 -11.65 6.54 99.48 0.65 -10.99 16 18 N -0.53 -21.24 11.23 -176.29 -1.98 -23.22 16 19 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 23 H 0.10 1.67 8.11 -2.39 -0.02 1.65 16 24 H 0.21 3.48 8.06 -2.91 -0.02 3.45 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.09 1.92 7.04 -2.38 -0.02 1.90 16 28 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.08 3.18 7.06 -2.39 -0.02 3.16 16 30 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 31 H 0.00 0.24 7.57 -2.39 -0.02 0.22 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -72.61 271.84 5.04 -67.58 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.02 Total: 4.64 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 5.51 Total: -22.09 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -3.38 Total: -97.58 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -72.61 5.04 -67.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.510 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds