Wall clock time and date at job start Mon Mar 30 2020 02:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33022 * 126.27277 * 2 1 4 4 C 1.31015 * 109.98047 * 180.02562 * 3 2 1 5 5 N 1.35078 * 109.64748 * 0.02562 * 4 3 2 6 6 C 1.46496 * 126.48136 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47128 * 264.95633 * 6 5 4 8 8 C 1.53003 * 109.47239 * 175.00358 * 7 6 5 9 9 C 1.53003 * 109.47386 * 295.00175 * 7 6 5 10 10 C 1.38435 * 107.02679 * 359.97438 * 5 4 3 11 11 C 1.40063 * 127.05532 * 180.02562 * 10 5 4 12 12 H 1.07998 * 120.00692 * 223.05620 * 11 10 5 13 13 C 1.40074 * 120.00041 * 43.05278 * 11 10 5 14 14 N 1.30861 * 119.99642 * 22.45883 * 13 11 10 15 15 Si 1.86795 * 120.00169 * 202.45811 * 13 11 10 16 16 H 1.48500 * 109.47479 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47542 * 120.00068 * 15 13 11 18 18 H 1.48509 * 109.46863 * 240.00074 * 15 13 11 19 19 H 1.09004 * 109.47117 * 90.41203 * 1 2 3 20 20 H 1.09001 * 109.47058 * 210.41102 * 1 2 3 21 21 H 1.08995 * 109.47019 * 330.41286 * 1 2 3 22 22 H 1.07998 * 125.17182 * 179.97438 * 4 3 2 23 23 H 1.08997 * 109.47345 * 24.96402 * 6 5 4 24 24 H 1.09006 * 109.46979 * 144.95948 * 6 5 4 25 25 H 1.08993 * 109.47231 * 55.00580 * 7 6 5 26 26 H 1.08999 * 109.46786 * 59.99539 * 8 7 6 27 27 H 1.08997 * 109.47306 * 180.02562 * 8 7 6 28 28 H 1.09004 * 109.46532 * 300.00044 * 8 7 6 29 29 H 1.08997 * 109.47113 * 179.97438 * 9 7 6 30 30 H 1.08999 * 109.46932 * 300.00640 * 9 7 6 31 31 H 1.08997 * 109.46692 * 60.00088 * 9 7 6 32 32 H 0.97001 * 119.99444 * 174.91052 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2940 1.0724 0.0000 4 6 3.5515 0.7049 -0.0006 5 7 3.6306 -0.6436 -0.0015 6 6 4.8574 -1.4441 -0.0018 7 6 5.2155 -1.8280 -1.4389 8 6 6.5609 -2.5567 -1.4520 9 6 4.1321 -2.7474 -2.0063 10 6 2.3329 -1.1257 -0.0009 11 6 1.9310 -2.4675 -0.0011 12 1 1.1211 -2.7886 -0.6392 13 6 2.5797 -3.3929 0.8265 14 7 3.2267 -2.9814 1.8869 15 14 2.5211 -5.2144 0.4164 16 1 1.7311 -5.4173 -0.8245 17 1 3.9022 -5.7207 0.2128 18 1 1.8828 -5.9534 1.5354 19 1 -0.3633 -0.0074 -1.0277 20 1 -0.3633 -0.8863 0.5202 21 1 -0.3633 0.8936 0.5074 22 1 4.3963 1.3777 -0.0011 23 1 5.6708 -0.8628 0.4325 24 1 4.7017 -2.3478 0.5876 25 1 5.2841 -0.9276 -2.0491 26 1 6.4923 -3.4571 -0.8417 27 1 6.8162 -2.8297 -2.4759 28 1 7.3327 -1.9016 -1.0478 29 1 4.3871 -3.0205 -3.0303 30 1 4.0635 -3.6479 -1.3960 31 1 3.1737 -2.2283 -1.9970 32 1 3.6130 -3.6264 2.4999 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:25 Heat of formation + Delta-G solvation = 16.205145 kcal Electronic energy + Delta-G solvation = -14378.772278 eV Core-core repulsion = 12145.785018 eV Total energy + Delta-G solvation = -2232.987261 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.96618 -37.37386 -35.31322 -33.32647 -31.61948 -29.36540 -27.83374 -26.57561 -25.62186 -22.02201 -21.00104 -20.23528 -18.78627 -17.17149 -16.58842 -15.87989 -15.74930 -14.91278 -14.67384 -14.40126 -13.83647 -13.57329 -13.37370 -13.21076 -13.07441 -12.92495 -12.73492 -12.54999 -12.51641 -12.04509 -11.83594 -11.72592 -11.56875 -10.82044 -10.31368 -9.67207 -8.69997 -8.42347 -6.22840 1.24432 1.39732 1.51172 1.87449 2.24682 2.57173 2.68809 3.16820 3.92478 4.05088 4.19077 4.27038 4.51602 4.69647 4.75043 4.83942 4.93522 5.00686 5.04866 5.09554 5.10181 5.20683 5.21780 5.37438 5.49541 5.57915 5.64582 6.02082 6.05648 6.57827 6.82404 6.98469 7.31991 7.90791 8.44877 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.023638 B = 0.017925 C = 0.012125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.252009 B = 1561.674821 C = 2308.815126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.177 4.177 3 N -0.514 5.514 4 C 0.070 3.930 5 N -0.458 5.458 6 C 0.108 3.892 7 C -0.101 4.101 8 C -0.135 4.135 9 C -0.138 4.138 10 C 0.198 3.802 11 C -0.480 4.480 12 H 0.081 0.919 13 C 0.059 3.941 14 N -0.845 5.845 15 Si 0.944 3.056 16 H -0.257 1.257 17 H -0.259 1.259 18 H -0.275 1.275 19 H 0.047 0.953 20 H 0.053 0.947 21 H 0.048 0.952 22 H 0.199 0.801 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 -3.807 -4.329 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.305 4.305 3 N -0.233 5.233 4 C -0.206 4.206 5 N -0.144 5.144 6 C -0.015 4.015 7 C -0.121 4.121 8 C -0.193 4.193 9 C -0.196 4.196 10 C 0.082 3.918 11 C -0.516 4.516 12 H 0.098 0.902 13 C -0.153 4.153 14 N -0.475 5.475 15 Si 0.766 3.234 16 H -0.180 1.180 17 H -0.184 1.184 18 H -0.201 1.201 19 H 0.065 0.935 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.216 0.784 23 H 0.093 0.907 24 H 0.112 0.888 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.941 -3.061 -4.178 7.882 hybrid contribution 0.227 -1.338 0.257 1.381 sum 6.168 -4.399 -3.921 8.531 Atomic orbital electron populations 1.19460 0.88413 1.00256 0.99852 1.21464 0.96239 0.88956 1.23827 1.69244 1.01613 1.32737 1.19725 1.24404 0.96171 0.83539 1.16516 1.45542 1.06743 1.06292 1.55799 1.22108 0.84027 0.97161 0.98187 1.21412 0.96631 0.99039 0.94992 1.21722 0.94740 1.00030 1.02761 1.21895 0.98965 0.99046 0.99661 1.18721 0.81947 0.94281 0.96848 1.18280 1.18143 0.90549 1.24580 0.90159 1.26234 0.92353 1.03810 0.92905 1.69842 1.30357 1.38133 1.09195 0.85744 0.79550 0.78495 0.79606 1.18015 1.18389 1.20099 0.93454 0.92846 0.93343 0.78404 0.90694 0.88782 0.91801 0.93156 0.90802 0.91381 0.92166 0.93854 0.93346 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -1.00 10.26 71.24 0.73 -0.27 16 2 C -0.18 -9.48 7.25 42.71 0.31 -9.17 16 3 N -0.51 -27.18 11.18 -185.05 -2.07 -29.25 16 4 C 0.07 3.34 12.51 180.10 2.25 5.59 16 5 N -0.46 -22.00 2.65 -519.75 -1.38 -23.38 16 6 C 0.11 4.38 5.14 86.38 0.44 4.83 16 7 C -0.10 -3.46 3.13 -10.79 -0.03 -3.49 16 8 C -0.13 -3.51 9.19 71.98 0.66 -2.85 16 9 C -0.14 -5.14 7.84 71.98 0.56 -4.57 16 10 C 0.20 10.48 4.90 38.88 0.19 10.67 16 11 C -0.48 -24.60 6.43 23.16 0.15 -24.46 16 12 H 0.08 4.12 7.94 -2.91 -0.02 4.10 16 13 C 0.06 2.84 3.66 85.28 0.31 3.15 16 14 N -0.84 -42.34 11.16 21.86 0.24 -42.09 16 15 Si 0.94 36.84 27.77 68.60 1.90 38.74 16 16 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 17 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 19 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 20 H 0.05 2.40 8.00 -2.39 -0.02 2.38 16 21 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.20 7.77 8.06 -2.91 -0.02 7.74 16 23 H 0.07 2.71 8.13 -2.39 -0.02 2.69 16 24 H 0.09 4.21 4.71 -2.38 -0.01 4.20 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.65 5.48 -2.39 -0.01 1.63 16 31 H 0.05 2.12 5.44 -2.39 -0.01 2.11 16 32 H 0.28 13.05 8.30 -92.71 -0.77 12.28 16 Total: -1.00 -60.22 257.44 5.38 -54.84 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 1.09 Total: 21.71 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 5.58 Total: -20.57 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -3.20 Total: -94.72 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 1.90 Total: 38.74 kcal Total: -60.22 5.38 -54.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.043 kcal (2) G-P(sol) polarization free energy of solvation -60.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds