Wall clock time and date at job start Mon Mar 30 2020 02:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47354 * 2 1 4 4 H 1.09005 * 109.47160 * 305.00252 * 3 2 1 5 5 C 1.53000 * 109.47063 * 64.99960 * 3 2 1 6 6 C 1.53000 * 109.47308 * 185.00108 * 3 2 1 7 7 H 1.09002 * 109.46617 * 296.41943 * 6 3 2 8 8 C 1.50697 * 109.47153 * 176.42192 * 6 3 2 9 9 H 1.08003 * 119.99666 * 335.42274 * 8 6 3 10 10 C 1.37874 * 119.99918 * 155.43158 * 8 6 3 11 11 N 1.31516 * 120.00092 * 355.34679 * 10 8 6 12 12 Si 1.86806 * 119.99867 * 175.34794 * 10 8 6 13 13 H 1.48504 * 109.46823 * 59.99867 * 12 10 8 14 14 H 1.48496 * 109.46857 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47134 * 300.00130 * 12 10 8 16 16 C 1.50699 * 109.47082 * 56.41826 * 6 3 2 17 17 C 1.34510 * 125.79205 * 244.72403 * 16 6 3 18 18 C 1.41384 * 106.84453 * 180.02562 * 17 16 6 19 19 C 1.34522 * 106.83763 * 359.97438 * 18 17 16 20 20 O 1.34300 * 108.41758 * 359.73991 * 19 18 17 21 21 H 1.09005 * 109.47033 * 300.00067 * 1 2 3 22 22 H 1.09000 * 109.47457 * 59.99413 * 1 2 3 23 23 H 1.09000 * 109.47744 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46607 * 240.00060 * 2 1 3 25 25 H 1.08996 * 109.47003 * 120.00407 * 2 1 3 26 26 H 1.08999 * 109.47313 * 300.00286 * 5 3 2 27 27 H 1.09005 * 109.46895 * 60.00129 * 5 3 2 28 28 H 1.09000 * 109.47264 * 180.02562 * 5 3 2 29 29 H 0.96999 * 119.99557 * 5.43896 * 11 10 8 30 30 H 1.08001 * 126.57980 * 359.96423 * 17 16 6 31 31 H 1.07994 * 126.58199 * 180.02562 * 18 17 16 32 32 H 1.08001 * 125.78810 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1257 7 1 4.0020 0.9609 0.7480 8 6 4.0599 2.8649 -0.2142 9 1 3.4050 3.6433 -0.5768 10 6 5.3489 3.1707 0.1678 11 7 6.1166 2.2419 0.6946 12 14 6.0050 4.9045 -0.0631 13 1 5.1666 5.8576 0.7076 14 1 7.4061 4.9724 0.4240 15 1 5.9633 5.2617 -1.5039 16 6 3.9673 0.6937 -1.3690 17 6 4.6696 -0.4529 -1.4030 18 6 4.8201 -0.8010 -2.7651 19 6 4.2000 0.1536 -3.4820 20 8 3.6802 1.0530 -2.6309 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.5490 2.1252 1.3970 27 1 2.0700 1.5874 2.1492 28 1 1.9983 3.1543 1.3072 29 1 5.8048 1.3246 0.7422 30 1 5.0472 -1.0018 -0.5530 31 1 5.3334 -1.6674 -3.1550 32 1 4.1282 0.1881 -4.5590 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:40 Heat of formation + Delta-G solvation = -16.247047 kcal Electronic energy + Delta-G solvation = -14091.272877 eV Core-core repulsion = 11824.585632 eV Total energy + Delta-G solvation = -2266.687245 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.55621 -36.63140 -33.15526 -31.95238 -30.17270 -28.64282 -25.84516 -24.27120 -22.20050 -20.81167 -19.84509 -18.93042 -17.05552 -16.14690 -15.04891 -14.41317 -14.15021 -13.74201 -13.27624 -12.84638 -12.52132 -12.11853 -11.86743 -11.74475 -11.58908 -11.23319 -10.91898 -10.86971 -10.66515 -10.15780 -9.99031 -9.87997 -9.45976 -9.01222 -8.77139 -8.40680 -7.32858 -6.41476 -4.15219 2.78071 3.41075 3.44561 3.60372 3.62389 4.08392 4.49239 5.28804 5.48681 5.56027 5.64215 5.74436 5.85881 5.94891 6.11838 6.21003 6.28738 6.33087 6.52786 6.59181 6.63166 6.71936 6.78938 6.87686 6.99604 7.11894 7.26077 7.31472 7.50227 8.00267 8.25947 8.39664 8.79022 9.55972 10.95920 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.014346 C = 0.010278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.509626 B = 1951.322012 C = 2723.588360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.074 4.074 4 H 0.059 0.941 5 C -0.131 4.131 6 C 0.098 3.902 7 H 0.063 0.937 8 C -0.588 4.588 9 H 0.056 0.944 10 C 0.025 3.975 11 N -0.902 5.902 12 Si 1.066 2.934 13 H -0.286 1.286 14 H -0.282 1.282 15 H -0.287 1.287 16 C 0.071 3.929 17 C -0.267 4.267 18 C -0.209 4.209 19 C -0.091 4.091 20 O -0.170 6.170 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.271 0.729 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.533 -3.472 -2.834 7.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.092 4.092 4 H 0.078 0.922 5 C -0.188 4.188 6 C 0.079 3.921 7 H 0.081 0.919 8 C -0.626 4.626 9 H 0.074 0.926 10 C -0.181 4.181 11 N -0.536 5.536 12 Si 0.894 3.106 13 H -0.212 1.212 14 H -0.207 1.207 15 H -0.214 1.214 16 C 0.019 3.981 17 C -0.286 4.286 18 C -0.229 4.229 19 C -0.158 4.158 20 O -0.066 6.066 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.376 -2.249 -2.614 6.387 hybrid contribution -0.924 -1.353 -0.551 1.729 sum -6.300 -3.603 -3.165 7.918 Atomic orbital electron populations 1.21806 0.96912 1.00426 1.01447 1.21676 0.94825 0.98167 1.01417 1.21085 0.96470 0.93784 0.97900 0.92221 1.21701 0.98430 1.01900 0.96799 1.17862 0.91782 0.95839 0.86622 0.91947 1.21812 1.00189 0.91946 1.48605 0.92610 1.25863 0.93692 1.05822 0.92748 1.70790 1.40124 1.03227 1.39504 0.83583 0.76376 0.74149 0.76497 1.21231 1.20745 1.21357 1.24071 0.96544 0.92777 0.84696 1.21391 1.10181 1.00347 0.96691 1.21609 1.05708 1.01450 0.94093 1.23655 1.04640 0.92045 0.95440 1.84030 1.61085 1.45119 1.16320 0.92766 0.93246 0.93754 0.92459 0.92680 0.94394 0.93741 0.91565 0.91738 0.85067 0.85057 0.79755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 37.16 0.36 -1.85 16 2 C -0.12 -2.21 5.21 -26.73 -0.14 -2.35 16 3 C -0.07 -1.52 1.95 -90.62 -0.18 -1.70 16 4 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 5 C -0.13 -2.49 8.75 37.16 0.32 -2.17 16 6 C 0.10 2.38 1.49 -92.93 -0.14 2.24 16 7 H 0.06 1.62 6.66 -51.93 -0.35 1.27 16 8 C -0.59 -15.96 7.21 -34.44 -0.25 -16.21 16 9 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 10 C 0.02 0.69 5.46 -17.82 -0.10 0.59 16 11 N -0.90 -26.67 13.62 55.43 0.76 -25.91 16 12 Si 1.07 25.05 29.91 -169.99 -5.08 19.96 16 13 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.07 1.71 4.31 -35.63 -0.15 1.55 16 17 C -0.27 -6.00 10.73 -39.70 -0.43 -6.43 16 18 C -0.21 -4.15 10.91 -39.70 -0.43 -4.59 16 19 C -0.09 -1.78 12.09 29.42 0.36 -1.42 16 20 O -0.17 -3.99 10.65 5.71 0.06 -3.93 16 21 H 0.05 0.76 6.57 -51.93 -0.34 0.42 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.09 6.89 -51.93 -0.36 0.73 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.61 6.56 -51.93 -0.34 0.27 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.36 7.33 -51.93 -0.38 0.98 16 29 H 0.27 7.96 6.67 -40.82 -0.27 7.68 16 30 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 31 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.19 2.75 8.06 -52.49 -0.42 2.32 16 LS Contribution 266.63 15.07 4.02 4.02 Total: -1.00 -29.70 266.63 -5.65 -35.35 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.63 Total: 2.84 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: -0.77 Total: -32.33 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.76 Total: -25.91 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: 0.06 Total: -3.93 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.70 -5.65 -35.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.106 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds