Wall clock time and date at job start Mon Mar 30 2020 02:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47354 * 2 1 4 4 H 1.09005 * 109.47160 * 305.00252 * 3 2 1 5 5 C 1.53000 * 109.47063 * 64.99960 * 3 2 1 6 6 C 1.53000 * 109.47308 * 185.00108 * 3 2 1 7 7 H 1.09002 * 109.46617 * 296.41943 * 6 3 2 8 8 C 1.50697 * 109.47153 * 176.42192 * 6 3 2 9 9 H 1.08003 * 119.99666 * 335.42274 * 8 6 3 10 10 C 1.37874 * 119.99918 * 155.43158 * 8 6 3 11 11 N 1.31516 * 120.00092 * 355.34679 * 10 8 6 12 12 Si 1.86806 * 119.99867 * 175.34794 * 10 8 6 13 13 H 1.48504 * 109.46823 * 59.99867 * 12 10 8 14 14 H 1.48496 * 109.46857 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47134 * 300.00130 * 12 10 8 16 16 C 1.50699 * 109.47082 * 56.41826 * 6 3 2 17 17 C 1.34510 * 125.79205 * 244.72403 * 16 6 3 18 18 C 1.41384 * 106.84453 * 180.02562 * 17 16 6 19 19 C 1.34522 * 106.83763 * 359.97438 * 18 17 16 20 20 O 1.34300 * 108.41758 * 359.73991 * 19 18 17 21 21 H 1.09005 * 109.47033 * 300.00067 * 1 2 3 22 22 H 1.09000 * 109.47457 * 59.99413 * 1 2 3 23 23 H 1.09000 * 109.47744 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46607 * 240.00060 * 2 1 3 25 25 H 1.08996 * 109.47003 * 120.00407 * 2 1 3 26 26 H 1.08999 * 109.47313 * 300.00286 * 5 3 2 27 27 H 1.09005 * 109.46895 * 60.00129 * 5 3 2 28 28 H 1.09000 * 109.47264 * 180.02562 * 5 3 2 29 29 H 0.96999 * 119.99557 * 5.43896 * 11 10 8 30 30 H 1.08001 * 126.57980 * 359.96423 * 17 16 6 31 31 H 1.07994 * 126.58199 * 180.02562 * 18 17 16 32 32 H 1.08001 * 125.78810 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1257 7 1 4.0020 0.9609 0.7480 8 6 4.0599 2.8649 -0.2142 9 1 3.4050 3.6433 -0.5768 10 6 5.3489 3.1707 0.1678 11 7 6.1166 2.2419 0.6946 12 14 6.0050 4.9045 -0.0631 13 1 5.1666 5.8576 0.7076 14 1 7.4061 4.9724 0.4240 15 1 5.9633 5.2617 -1.5039 16 6 3.9673 0.6937 -1.3690 17 6 4.6696 -0.4529 -1.4030 18 6 4.8201 -0.8010 -2.7651 19 6 4.2000 0.1536 -3.4820 20 8 3.6802 1.0530 -2.6309 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.5490 2.1252 1.3970 27 1 2.0700 1.5874 2.1492 28 1 1.9983 3.1543 1.3072 29 1 5.8048 1.3246 0.7422 30 1 5.0472 -1.0018 -0.5530 31 1 5.3334 -1.6674 -3.1550 32 1 4.1282 0.1881 -4.5590 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:40 Heat of formation + Delta-G solvation = -32.530255 kcal Electronic energy + Delta-G solvation = -14091.978970 eV Core-core repulsion = 11824.585632 eV Total energy + Delta-G solvation = -2267.393337 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.26799 -38.31543 -35.06197 -33.66142 -31.87644 -30.20267 -27.66620 -26.00568 -23.89429 -22.48667 -21.53154 -20.60185 -19.01151 -17.85570 -16.77045 -16.07609 -15.76767 -15.63360 -14.89138 -14.51120 -14.16290 -13.72693 -13.56817 -13.37230 -13.13905 -12.81806 -12.61386 -12.55890 -12.26138 -11.98520 -11.60823 -11.43471 -11.19912 -10.81226 -10.62547 -10.48728 -9.06086 -8.59565 -6.34164 1.11421 1.51322 1.58647 1.77388 1.89840 2.43936 2.55805 3.20215 3.98347 4.09556 4.15430 4.25370 4.31967 4.44875 4.60647 4.76103 4.80900 4.88460 4.96275 5.08654 5.12358 5.16354 5.19411 5.25099 5.38170 5.48799 5.59991 5.66828 5.78318 6.02042 6.17748 6.52440 6.63666 7.43983 8.76885 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.014346 C = 0.010278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.509626 B = 1951.322012 C = 2723.588360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.070 4.070 4 H 0.048 0.952 5 C -0.125 4.125 6 C 0.095 3.905 7 H 0.037 0.963 8 C -0.592 4.592 9 H 0.048 0.952 10 C -0.025 4.025 11 N -0.931 5.931 12 Si 1.106 2.894 13 H -0.265 1.265 14 H -0.285 1.285 15 H -0.278 1.278 16 C 0.041 3.959 17 C -0.276 4.276 18 C -0.216 4.216 19 C -0.081 4.081 20 O -0.193 6.193 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.260 0.740 30 H 0.129 0.871 31 H 0.166 0.834 32 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 -3.663 -3.949 9.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.089 4.089 4 H 0.066 0.934 5 C -0.183 4.183 6 C 0.077 3.923 7 H 0.055 0.945 8 C -0.629 4.629 9 H 0.066 0.934 10 C -0.224 4.224 11 N -0.568 5.568 12 Si 0.929 3.071 13 H -0.190 1.190 14 H -0.211 1.211 15 H -0.204 1.204 16 C -0.010 4.010 17 C -0.296 4.296 18 C -0.235 4.235 19 C -0.147 4.147 20 O -0.090 6.090 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.184 0.816 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.385 -2.448 -3.727 7.787 hybrid contribution -0.647 -1.373 -0.277 1.543 sum -7.032 -3.821 -4.004 8.949 Atomic orbital electron populations 1.21757 0.94030 1.02050 1.02113 1.21570 0.97248 0.95864 1.00682 1.21026 0.93948 0.95759 0.98150 0.93357 1.21644 1.00505 1.00259 0.95847 1.17760 0.94075 0.94179 0.86334 0.94533 1.22086 1.00000 0.93339 1.47484 0.93386 1.27126 0.94368 1.08576 0.92333 1.70896 1.40786 1.03099 1.41978 0.83068 0.75947 0.70955 0.77163 1.18992 1.21070 1.20353 1.23778 0.98399 0.93895 0.84928 1.21625 1.09480 1.00134 0.98327 1.21991 1.06073 1.02846 0.92624 1.24653 1.02472 0.90506 0.97069 1.83993 1.61980 1.46540 1.16478 0.91613 0.93026 0.91711 0.93909 0.92725 0.91064 0.94008 0.93637 0.92969 0.85309 0.81600 0.74941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.67 71.98 0.70 -3.19 16 2 C -0.12 -4.09 5.21 30.59 0.16 -3.93 16 3 C -0.07 -2.91 1.95 -10.79 -0.02 -2.93 16 4 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 5 C -0.13 -4.73 8.75 71.98 0.63 -4.10 16 6 C 0.10 4.77 1.49 -12.29 -0.02 4.75 16 7 H 0.04 1.99 6.66 -2.39 -0.02 1.98 16 8 C -0.59 -32.80 7.21 25.60 0.18 -32.61 16 9 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 10 C -0.02 -1.40 5.46 84.65 0.46 -0.94 16 11 N -0.93 -56.56 13.62 21.45 0.29 -56.27 16 12 Si 1.11 50.64 29.91 68.60 2.05 52.69 16 13 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 14 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 16 C 0.04 2.01 4.31 24.83 0.11 2.12 16 17 C -0.28 -12.46 10.73 22.19 0.24 -12.22 16 18 C -0.22 -8.15 10.91 22.19 0.24 -7.91 16 19 C -0.08 -2.97 12.09 66.97 0.81 -2.16 16 20 O -0.19 -8.97 10.65 -2.47 -0.03 -8.99 16 21 H 0.06 1.64 6.57 -2.38 -0.02 1.62 16 22 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 24 H 0.04 1.61 6.89 -2.39 -0.02 1.60 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.17 6.56 -2.39 -0.02 2.16 16 27 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.04 1.87 7.33 -2.39 -0.02 1.85 16 29 H 0.26 15.90 6.67 -92.71 -0.62 15.28 16 30 H 0.13 5.71 8.06 -2.91 -0.02 5.68 16 31 H 0.17 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.23 5.91 8.06 -2.91 -0.02 5.89 16 Total: -1.00 -65.02 266.63 7.04 -57.98 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 1.23 Total: 17.70 kcal Atomic # 6 Polarization: -66.60 SS G_CDS: 3.49 Total: -63.11 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.29 Total: -56.27 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.03 Total: -8.99 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -65.02 7.04 -57.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.450 kcal (2) G-P(sol) polarization free energy of solvation -65.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds