Wall clock time and date at job start Mon Mar 30 2020 02:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34858 * 125.88533 * 2 1 4 4 C 1.40893 * 107.41085 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.28541 * 180.02562 * 4 3 2 6 6 C 1.34843 * 107.42040 * 359.97438 * 4 3 2 7 7 C 1.50705 * 125.89176 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.46731 * 0.02562 * 7 6 4 9 9 C 1.50700 * 109.47347 * 240.00277 * 7 6 4 10 10 H 1.07998 * 120.00086 * 268.91445 * 9 7 6 11 11 C 1.37878 * 119.99852 * 88.91735 * 9 7 6 12 12 N 1.31512 * 120.00058 * 1.16518 * 11 9 7 13 13 Si 1.86792 * 119.99663 * 181.16563 * 11 9 7 14 14 H 1.48500 * 109.47288 * 269.99355 * 13 11 9 15 15 H 1.48495 * 109.47702 * 30.00005 * 13 11 9 16 16 H 1.48509 * 109.47107 * 149.99886 * 13 11 9 17 17 C 1.52995 * 109.47041 * 119.99837 * 7 6 4 18 18 N 1.46906 * 109.47047 * 185.36064 * 17 7 6 19 19 N 1.36338 * 108.22092 * 0.26684 * 6 4 3 20 20 H 0.96996 * 125.63755 * 179.74210 * 19 6 4 21 21 H 1.09005 * 109.47331 * 90.02843 * 1 2 3 22 22 H 1.09007 * 109.46905 * 210.02064 * 1 2 3 23 23 H 1.09000 * 109.47432 * 330.02134 * 1 2 3 24 24 H 1.07993 * 126.29165 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47178 * 269.96960 * 5 4 3 26 26 H 1.09001 * 109.47154 * 29.97370 * 5 4 3 27 27 H 1.09006 * 109.46802 * 149.97594 * 5 4 3 28 28 H 0.97006 * 120.00431 * 355.27990 * 12 11 9 29 29 H 1.08999 * 109.47472 * 305.36492 * 17 7 6 30 30 H 1.09004 * 109.46910 * 65.36750 * 17 7 6 31 31 H 1.00899 * 110.99772 * 61.90662 * 18 17 7 32 32 H 1.00900 * 110.99711 * 185.85518 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2974 1.0926 0.0000 4 6 3.6338 0.6461 0.0006 5 6 4.8647 1.5157 0.0014 6 6 3.6090 -0.7021 0.0015 7 6 4.8134 -1.6079 0.0019 8 1 5.7215 -1.0049 0.0017 9 6 4.7877 -2.4784 -1.2280 10 1 4.3069 -3.4449 -1.1955 11 6 5.3780 -2.0409 -2.3947 12 7 5.9834 -0.8739 -2.4279 13 14 5.3177 -3.1058 -3.9282 14 1 6.5028 -4.0002 -3.9566 15 1 4.0794 -3.9252 -3.9136 16 1 5.3232 -2.2385 -5.1337 17 6 4.7878 -2.4899 1.2517 18 7 6.0240 -3.2807 1.3184 19 7 2.3063 -1.1045 -0.0045 20 1 1.9991 -2.0245 -0.0089 21 1 -0.3634 -0.0005 -1.0277 22 1 -0.3633 -0.8899 0.5142 23 1 -0.3634 0.8902 0.5135 24 1 1.9669 2.1207 0.0004 25 1 5.1622 1.7251 -1.0261 26 1 4.6475 2.4524 0.5148 27 1 5.6745 0.9985 0.5159 28 1 5.9560 -0.2910 -1.6530 29 1 4.7103 -1.8612 2.1387 30 1 3.9297 -3.1605 1.2056 31 1 6.8327 -2.6819 1.3932 32 1 5.9907 -3.9401 2.0813 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282586.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:35 Heat of formation + Delta-G solvation = -0.302175 kcal Electronic energy + Delta-G solvation = -13961.082123 eV Core-core repulsion = 11727.379051 eV Total energy + Delta-G solvation = -2233.703072 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.97589 -37.09459 -34.38763 -33.45563 -32.29424 -30.00000 -28.34333 -26.09415 -25.19500 -22.44094 -20.98888 -19.72379 -18.94921 -17.45467 -16.28555 -15.72599 -15.60779 -15.52227 -15.19284 -14.19763 -13.97575 -13.87622 -13.50831 -13.48620 -13.22243 -13.09648 -12.80507 -12.69338 -12.48396 -11.97531 -11.92073 -11.53814 -10.66982 -10.42373 -9.40036 -9.35169 -8.49468 -8.31277 -6.12895 1.52354 1.58069 1.65234 1.77013 2.20442 2.62625 2.71423 3.34040 3.85376 4.21589 4.29181 4.45644 4.48116 4.56615 4.74981 4.78673 4.83955 4.86312 4.98692 5.02251 5.11203 5.24967 5.26314 5.56622 5.78037 6.05925 6.29762 6.39101 6.45911 6.58329 6.73643 6.83037 7.05134 7.63433 8.98563 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.024333 B = 0.012483 C = 0.011168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.442470 B = 2242.496151 C = 2506.597529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.012 4.012 3 C -0.218 4.218 4 C -0.225 4.225 5 C -0.059 4.059 6 C 0.054 3.946 7 C 0.086 3.914 8 H 0.028 0.972 9 C -0.563 4.563 10 H 0.038 0.962 11 C -0.027 4.027 12 N -0.944 5.944 13 Si 1.108 2.892 14 H -0.278 1.278 15 H -0.277 1.277 16 H -0.292 1.292 17 C 0.093 3.907 18 N -0.840 5.840 19 N -0.547 5.547 20 H 0.411 0.589 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.140 0.860 25 H 0.036 0.964 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.269 0.731 29 H 0.008 0.992 30 H 0.053 0.947 31 H 0.337 0.663 32 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 0.147 6.781 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C -0.243 4.243 4 C -0.230 4.230 5 C -0.116 4.116 6 C -0.061 4.061 7 C 0.066 3.934 8 H 0.046 0.954 9 C -0.602 4.602 10 H 0.057 0.943 11 C -0.226 4.226 12 N -0.583 5.583 13 Si 0.933 3.067 14 H -0.204 1.204 15 H -0.202 1.202 16 H -0.219 1.219 17 C -0.039 4.039 18 N -0.370 5.370 19 N -0.142 5.142 20 H 0.248 0.752 21 H 0.089 0.911 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.158 0.842 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.465 -0.354 4.504 8.726 hybrid contribution -0.183 0.265 2.310 2.332 sum -7.648 -0.089 6.815 10.244 Atomic orbital electron populations 1.20283 0.85586 1.03986 1.02858 1.20818 0.94790 0.85902 1.10877 1.20679 0.91967 0.98094 1.13586 1.19527 0.95778 0.93128 1.14601 1.19913 0.93898 0.97884 0.99934 1.21039 0.86097 0.94311 1.04638 1.17538 0.89590 0.91959 0.94308 0.95356 1.21815 1.39399 1.02618 0.96334 0.94350 1.26840 0.93013 0.98640 1.04135 1.70788 1.42127 1.10860 1.34505 0.83031 0.76917 0.73986 0.72792 1.20409 1.20212 1.21869 1.21556 0.92523 0.94559 0.95230 1.58377 1.03982 1.22342 1.52313 1.41736 1.05432 1.08201 1.58819 0.75240 0.91062 0.90833 0.88962 0.84234 0.94474 0.90972 0.93985 0.91894 0.97358 0.92873 0.85053 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.42 71.23 0.74 -0.95 16 2 C -0.01 -0.43 7.16 41.08 0.29 -0.14 16 3 C -0.22 -8.61 10.71 22.14 0.24 -8.37 16 4 C -0.22 -10.16 6.14 -19.99 -0.12 -10.28 16 5 C -0.06 -2.48 9.18 71.24 0.65 -1.83 16 6 C 0.05 2.52 5.65 41.08 0.23 2.75 16 7 C 0.09 4.22 2.07 -12.29 -0.03 4.19 16 8 H 0.03 1.55 5.23 -2.38 -0.01 1.53 16 9 C -0.56 -30.84 8.03 25.60 0.21 -30.63 16 10 H 0.04 2.12 7.81 -2.91 -0.02 2.10 16 11 C -0.03 -1.56 5.46 84.66 0.46 -1.10 16 12 N -0.94 -57.86 13.61 21.45 0.29 -57.57 16 13 Si 1.11 52.14 29.90 68.60 2.05 54.19 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 17 C 0.09 3.79 6.13 86.30 0.53 4.32 16 18 N -0.84 -31.66 9.32 -186.71 -1.74 -33.40 16 19 N -0.55 -21.90 6.07 -171.12 -1.04 -22.93 16 20 H 0.41 14.88 8.96 -92.71 -0.83 14.05 16 21 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 22 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 25 H 0.04 1.69 7.79 -2.39 -0.02 1.67 16 26 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.04 1.78 7.13 -2.38 -0.02 1.76 16 28 H 0.27 16.33 5.40 -92.70 -0.50 15.82 16 29 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 31 H 0.34 12.36 9.05 -89.69 -0.81 11.55 16 32 H 0.34 10.31 9.08 -89.69 -0.81 9.49 16 Total: -1.00 -67.30 268.56 1.72 -65.57 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -1.05 Total: 36.17 kcal Atomic # 6 Polarization: -45.24 SS G_CDS: 3.21 Total: -42.03 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -2.49 Total: -113.90 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 2.05 Total: 54.19 kcal Total: -67.30 1.72 -65.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282586.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.269 kcal (2) G-P(sol) polarization free energy of solvation -67.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds