Wall clock time and date at job start Mon Mar 30 2020 02:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99853 * 2 1 4 4 H 1.48497 * 109.46956 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47078 * 299.99969 * 3 2 1 6 6 H 1.48498 * 109.47240 * 59.99819 * 3 2 1 7 7 C 1.37879 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46936 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46811 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47077 * 180.02562 * 11 10 9 13 13 C 1.31000 * 120.00500 * 120.33106 * 12 11 10 14 14 C 1.50703 * 119.99509 * 353.84704 * 13 12 11 15 15 H 1.08993 * 115.56630 * 329.95811 * 14 13 12 16 16 C 1.53079 * 117.50974 * 184.25594 * 14 13 12 17 17 C 1.52996 * 117.49519 * 115.65112 * 14 13 12 18 18 H 1.08999 * 117.50349 * 215.00528 * 17 14 13 19 19 C 1.50706 * 117.49888 * 359.97438 * 17 14 13 20 20 O 1.20756 * 120.00031 * 239.91397 * 19 17 14 21 21 H 0.96997 * 120.00341 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47193 * 60.00535 * 9 7 2 23 23 H 1.08996 * 109.47570 * 299.99876 * 9 7 2 24 24 H 1.08997 * 109.47386 * 60.00081 * 10 9 7 25 25 H 1.09003 * 109.46923 * 299.99829 * 10 9 7 26 26 H 1.09003 * 109.47495 * 60.00186 * 11 10 9 27 27 H 1.08996 * 109.47393 * 299.99451 * 11 10 9 28 28 H 1.08005 * 120.00124 * 300.32573 * 12 11 10 29 29 H 1.08003 * 120.00471 * 173.85967 * 13 12 11 30 30 H 1.08997 * 117.49272 * 145.03935 * 16 14 13 31 31 H 1.08997 * 117.51464 * 0.02562 * 16 14 13 32 32 H 1.08000 * 119.99926 * 59.63859 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0033 12 6 2.4596 -6.1325 0.0049 13 6 2.4492 -7.0019 0.9848 14 6 1.5551 -6.7817 2.1779 15 1 1.3532 -5.7404 2.4285 16 6 1.6607 -7.7792 3.3342 17 6 0.4353 -7.7961 2.4182 18 1 -0.5036 -7.4222 2.8265 19 6 0.3105 -8.9387 1.4434 20 8 -0.7085 -9.0852 0.8122 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5576 -0.8881 23 1 0.6247 -2.5564 0.8919 24 1 2.8720 -3.6036 0.8926 25 1 2.8720 -3.6051 -0.8873 26 1 0.8540 -5.0454 -0.8869 27 1 0.8535 -5.0443 0.8931 28 1 3.1701 -6.2368 -0.8018 29 1 3.0813 -7.8763 0.9378 30 1 1.5281 -7.3937 4.3450 31 1 2.3770 -8.5944 3.2322 32 1 1.1339 -9.6238 1.3061 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308116095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:47 Heat of formation + Delta-G solvation = -16.629453 kcal Electronic energy + Delta-G solvation = -12767.229882 eV Core-core repulsion = 10500.526055 eV Total energy + Delta-G solvation = -2266.703827 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.54407 -37.59801 -35.18502 -33.03516 -30.91566 -26.95591 -25.41050 -23.51890 -22.53676 -20.95625 -20.13415 -18.09282 -16.53417 -16.24672 -15.61911 -15.31601 -14.45719 -14.19647 -13.81466 -13.65653 -12.96263 -12.46913 -12.31908 -11.98303 -11.30927 -11.09767 -11.00381 -10.76795 -10.55571 -10.49250 -10.27089 -9.78953 -9.63865 -9.33798 -9.08927 -8.53047 -8.33216 -5.97920 -4.00279 1.77010 2.28213 3.31862 3.39248 3.43484 3.82561 4.09853 4.47517 4.55359 4.70977 4.78846 5.18523 5.26438 5.37708 5.46937 5.59863 5.65355 5.82536 5.94228 6.10390 6.18454 6.33642 6.66244 6.77104 6.94101 7.04217 7.18249 7.29351 7.70821 7.85657 8.02861 8.45709 9.07491 9.63795 11.13460 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.051301 B = 0.005164 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.669715 B = 5421.372660 C = 5501.856416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.105 4.105 11 C -0.106 4.106 12 C -0.114 4.114 13 C -0.175 4.175 14 C -0.081 4.081 15 H 0.126 0.874 16 C -0.155 4.155 17 C -0.234 4.234 18 H 0.124 0.876 19 C 0.379 3.621 20 O -0.462 6.462 21 H 0.259 0.741 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 -15.702 4.994 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.142 4.142 11 C -0.143 4.143 12 C -0.132 4.132 13 C -0.193 4.193 14 C -0.099 4.099 15 H 0.144 0.856 16 C -0.192 4.192 17 C -0.253 4.253 18 H 0.142 0.858 19 C 0.235 3.765 20 O -0.333 6.333 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.942 -15.665 4.649 16.809 hybrid contribution 0.508 1.037 0.076 1.158 sum 4.451 -14.628 4.725 16.003 Atomic orbital electron populations 1.69978 1.06065 1.26440 1.51092 1.25037 0.94834 0.99255 0.95408 0.86554 0.80125 0.83873 0.77570 1.19746 1.21022 1.21031 1.21319 0.93062 0.91158 1.50241 0.92686 1.19130 0.94058 0.91450 0.97170 1.21581 0.99006 0.93349 1.00309 1.21025 0.97001 0.93813 1.02427 1.23120 0.97556 0.95278 0.97250 1.22047 1.01597 1.00603 0.95043 1.21329 0.96235 0.96431 0.95896 0.85615 1.23047 0.98226 1.02196 0.95702 1.23385 0.96303 1.01798 1.03811 0.85798 1.25230 0.88980 0.84252 0.78006 1.90395 1.32445 1.70199 1.40266 0.93087 0.96640 0.96702 0.93399 0.93410 0.91205 0.91366 0.87206 0.87279 0.87786 0.88034 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -2.16 5.14 -26.73 -0.14 -2.30 16 11 C -0.11 -1.81 5.43 -27.89 -0.15 -1.96 16 12 C -0.11 -1.58 9.51 -36.03 -0.34 -1.92 16 13 C -0.17 -2.06 8.67 -36.02 -0.31 -2.38 16 14 C -0.08 -0.93 4.95 -91.73 -0.45 -1.38 16 15 H 0.13 1.64 6.64 -51.93 -0.34 1.29 16 16 C -0.15 -1.31 9.94 -26.69 -0.27 -1.57 16 17 C -0.23 -2.48 6.26 -91.77 -0.57 -3.06 16 18 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 19 C 0.38 4.18 10.34 36.01 0.37 4.55 16 20 O -0.46 -7.10 17.92 6.00 0.11 -6.99 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.16 5.53 -51.93 -0.29 0.87 16 28 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.11 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 279.38 15.07 4.21 4.21 Total: -1.00 -32.18 279.38 -7.21 -39.39 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -4.82 Total: -3.43 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -2.42 Total: -23.39 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.74 Total: -26.61 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: 0.11 Total: -6.99 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.18 -7.21 -39.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308116095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.758 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds