Wall clock time and date at job start Mon Mar 30 2020 02:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99853 * 2 1 4 4 H 1.48497 * 109.46956 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47078 * 299.99969 * 3 2 1 6 6 H 1.48498 * 109.47240 * 59.99819 * 3 2 1 7 7 C 1.37879 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46936 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46811 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47077 * 180.02562 * 11 10 9 13 13 C 1.31000 * 120.00500 * 120.33106 * 12 11 10 14 14 C 1.50703 * 119.99509 * 353.84704 * 13 12 11 15 15 H 1.08993 * 115.56630 * 329.95811 * 14 13 12 16 16 C 1.53079 * 117.50974 * 184.25594 * 14 13 12 17 17 C 1.52996 * 117.49519 * 115.65112 * 14 13 12 18 18 H 1.08999 * 117.50349 * 215.00528 * 17 14 13 19 19 C 1.50706 * 117.49888 * 359.97438 * 17 14 13 20 20 O 1.20756 * 120.00031 * 239.91397 * 19 17 14 21 21 H 0.96997 * 120.00341 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47193 * 60.00535 * 9 7 2 23 23 H 1.08996 * 109.47570 * 299.99876 * 9 7 2 24 24 H 1.08997 * 109.47386 * 60.00081 * 10 9 7 25 25 H 1.09003 * 109.46923 * 299.99829 * 10 9 7 26 26 H 1.09003 * 109.47495 * 60.00186 * 11 10 9 27 27 H 1.08996 * 109.47393 * 299.99451 * 11 10 9 28 28 H 1.08005 * 120.00124 * 300.32573 * 12 11 10 29 29 H 1.08003 * 120.00471 * 173.85967 * 13 12 11 30 30 H 1.08997 * 117.49272 * 145.03935 * 16 14 13 31 31 H 1.08997 * 117.51464 * 0.02562 * 16 14 13 32 32 H 1.08000 * 119.99926 * 59.63859 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0033 12 6 2.4596 -6.1325 0.0049 13 6 2.4492 -7.0019 0.9848 14 6 1.5551 -6.7817 2.1779 15 1 1.3532 -5.7404 2.4285 16 6 1.6607 -7.7792 3.3342 17 6 0.4353 -7.7961 2.4182 18 1 -0.5036 -7.4222 2.8265 19 6 0.3105 -8.9387 1.4434 20 8 -0.7085 -9.0852 0.8122 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5576 -0.8881 23 1 0.6247 -2.5564 0.8919 24 1 2.8720 -3.6036 0.8926 25 1 2.8720 -3.6051 -0.8873 26 1 0.8540 -5.0454 -0.8869 27 1 0.8535 -5.0443 0.8931 28 1 3.1701 -6.2368 -0.8018 29 1 3.0813 -7.8763 0.9378 30 1 1.5281 -7.3937 4.3450 31 1 2.3770 -8.5944 3.2322 32 1 1.1339 -9.6238 1.3061 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308116095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:47 Heat of formation + Delta-G solvation = -35.262844 kcal Electronic energy + Delta-G solvation = -12768.037886 eV Core-core repulsion = 10500.526055 eV Total energy + Delta-G solvation = -2267.511831 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.47274 -38.59773 -36.67030 -34.90159 -32.59948 -28.73586 -26.32186 -25.29029 -23.46236 -22.16985 -21.66089 -19.17196 -18.35562 -17.45975 -16.66153 -16.50723 -16.36043 -15.40060 -15.04404 -14.79693 -14.42199 -14.17673 -13.73718 -13.16559 -13.02910 -12.73180 -12.64214 -12.31488 -12.05451 -11.69722 -11.47939 -11.34507 -11.17834 -11.09917 -10.65562 -10.57808 -9.62778 -8.21363 -6.33425 0.90107 1.29961 1.38995 1.39524 1.53254 2.40138 3.02025 3.11375 3.31832 3.71128 3.89576 3.98569 4.16514 4.26835 4.36738 4.56895 4.68325 4.79968 4.81606 4.95668 5.00532 5.11031 5.24817 5.28525 5.32518 5.52789 5.69700 5.72735 5.85922 6.01382 6.24095 6.46182 6.84434 7.36353 8.90805 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.051301 B = 0.005164 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.669715 B = 5421.372660 C = 5501.856416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.020 3.980 10 C -0.091 4.091 11 C -0.097 4.097 12 C -0.146 4.146 13 C -0.144 4.144 14 C -0.111 4.111 15 H 0.100 0.900 16 C -0.117 4.117 17 C -0.247 4.247 18 H 0.107 0.893 19 C 0.386 3.614 20 O -0.514 6.514 21 H 0.264 0.736 22 H -0.013 1.013 23 H -0.012 1.012 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.149 0.851 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 -16.926 5.806 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.017 4.017 10 C -0.128 4.128 11 C -0.134 4.134 12 C -0.164 4.164 13 C -0.161 4.161 14 C -0.130 4.130 15 H 0.118 0.882 16 C -0.153 4.153 17 C -0.266 4.266 18 H 0.126 0.874 19 C 0.245 3.755 20 O -0.388 6.388 21 H 0.072 0.928 22 H 0.005 0.995 23 H 0.007 0.993 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.167 0.833 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.349 -16.900 5.472 18.864 hybrid contribution -0.278 1.387 -0.095 1.417 sum 6.071 -15.513 5.377 17.505 Atomic orbital electron populations 1.70119 1.07964 1.27749 1.51864 1.26047 0.95779 1.03587 0.94671 0.85355 0.79106 0.78495 0.77834 1.18380 1.20334 1.20257 1.21766 0.93596 0.92420 1.50347 0.92076 1.19069 0.94578 0.93578 0.94466 1.21368 0.97805 0.93127 1.00533 1.20826 0.97434 0.93680 1.01484 1.22954 0.98530 0.95371 0.99556 1.22436 1.00026 1.00403 0.93258 1.21315 0.97584 0.95985 0.98094 0.88220 1.23239 0.96356 1.00894 0.94833 1.23395 0.96405 1.01672 1.05114 0.87440 1.25922 0.89086 0.84200 0.76242 1.90395 1.34735 1.71559 1.42146 0.92770 0.99490 0.99338 0.93027 0.93026 0.92667 0.92087 0.85675 0.83336 0.86828 0.84634 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.65 13.29 21.45 0.28 -58.37 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.09 -3.84 5.14 30.59 0.16 -3.68 16 11 C -0.10 -3.42 5.43 29.85 0.16 -3.26 16 12 C -0.15 -3.85 9.51 25.65 0.24 -3.60 16 13 C -0.14 -2.95 8.67 25.65 0.22 -2.73 16 14 C -0.11 -2.37 4.95 -11.51 -0.06 -2.43 16 15 H 0.10 2.65 6.64 -2.39 -0.02 2.64 16 16 C -0.12 -1.53 9.94 30.62 0.30 -1.22 16 17 C -0.25 -4.85 6.26 -11.54 -0.07 -4.92 16 18 H 0.11 2.42 8.14 -2.39 -0.02 2.41 16 19 C 0.39 7.61 10.34 71.24 0.74 8.34 16 20 O -0.51 -15.57 17.92 -1.44 -0.03 -15.60 16 21 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 22 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 23 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 2.19 5.53 -2.39 -0.01 2.18 16 28 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -72.54 279.38 5.90 -66.64 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.07 Total: 3.93 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 2.54 Total: -43.63 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.28 Total: -58.37 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.03 Total: -15.60 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -72.54 5.90 -66.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308116095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.381 kcal (2) G-P(sol) polarization free energy of solvation -72.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds