Wall clock time and date at job start Mon Mar 30 2020 02:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47520 * 292.93578 * 3 2 1 5 5 C 1.53000 * 109.47399 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46990 * 179.97438 * 5 4 3 7 7 C 1.47904 * 111.00054 * 69.88081 * 6 5 4 8 8 C 1.53995 * 107.05974 * 145.84166 * 7 6 5 9 9 C 1.54603 * 105.14000 * 358.77299 * 8 7 6 10 10 H 1.09000 * 110.72105 * 96.57841 * 9 8 7 11 11 C 1.50695 * 110.72429 * 219.68782 * 9 8 7 12 12 H 1.07995 * 120.00496 * 118.54590 * 11 9 8 13 13 C 1.37880 * 119.99572 * 298.54523 * 11 9 8 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 C 1.48539 * 110.99804 * 187.27379 * 6 5 4 20 20 H 1.09006 * 109.46560 * 172.93540 * 3 2 1 21 21 H 1.09003 * 109.46832 * 52.94064 * 3 2 1 22 22 H 1.09002 * 109.46887 * 60.00015 * 4 3 2 23 23 H 1.09003 * 109.47015 * 300.00725 * 4 3 2 24 24 H 1.09006 * 109.46597 * 60.00013 * 5 4 3 25 25 H 1.08990 * 109.47268 * 300.00463 * 5 4 3 26 26 H 1.08993 * 109.91739 * 26.48681 * 7 6 5 27 27 H 1.09002 * 109.91011 * 265.19066 * 7 6 5 28 28 H 1.08996 * 110.30427 * 239.85691 * 8 7 6 29 29 H 1.09000 * 110.30899 * 117.68338 * 8 7 6 30 30 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 31 31 H 1.09002 * 110.66679 * 81.84200 * 19 6 5 32 32 H 1.08997 * 110.66367 * 318.71520 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.5612 1.3284 5 6 4.6484 -0.5611 1.3281 6 7 5.1382 -1.1000 2.6038 7 6 4.8672 -2.5505 2.7055 8 6 6.0370 -3.1748 3.4885 9 6 6.9933 -1.9985 3.7920 10 1 6.8148 -1.6047 4.7925 11 6 8.4301 -2.4259 3.6376 12 1 9.0598 -1.9475 2.9021 13 6 8.9408 -3.4277 4.4355 14 7 8.1740 -4.0107 5.3308 15 14 10.7221 -3.9570 4.2447 16 1 11.6136 -2.7989 4.5082 17 1 10.9466 -4.4500 2.8620 18 1 11.0224 -5.0425 5.2126 19 6 6.6126 -0.9551 2.7118 20 1 2.9708 1.0208 -0.1264 21 1 2.9716 -0.6185 -0.8201 22 1 2.7555 -1.5813 1.4547 23 1 2.7547 0.0579 2.1484 24 1 5.0115 0.4588 1.2015 25 1 5.0116 -1.1805 0.5081 26 1 4.8116 -2.9886 1.7090 27 1 3.9319 -2.7168 3.2400 28 1 6.5416 -3.9253 2.8801 29 1 5.6769 -3.6186 4.4167 30 1 7.2491 -3.7356 5.4301 31 1 6.8774 0.0507 3.0381 32 1 7.0929 -1.1915 1.7623 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397602075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:18 Heat of formation + Delta-G solvation = 10.295537 kcal Electronic energy + Delta-G solvation = -13203.576248 eV Core-core repulsion = 10970.332728 eV Total energy + Delta-G solvation = -2233.243521 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.48010 -36.99315 -34.61667 -32.80895 -29.96895 -28.31523 -26.16452 -23.85884 -22.02005 -20.24480 -19.46641 -17.69309 -16.77533 -15.91581 -15.12041 -14.68094 -14.11055 -13.76694 -13.59374 -13.22382 -12.93984 -12.50204 -12.18074 -11.86904 -11.80346 -11.43068 -11.12213 -10.94389 -10.72634 -10.51669 -10.44928 -10.10601 -9.82198 -9.43136 -8.50599 -8.35800 -7.91367 -6.34079 -4.07165 2.59976 2.63630 3.42870 3.44144 3.63090 3.80160 4.44477 4.56192 4.83058 5.08821 5.13794 5.33624 5.38589 5.45634 5.64213 5.70659 5.82066 6.02660 6.09665 6.16539 6.27101 6.37556 6.65052 6.88979 6.91882 7.24213 7.40071 7.41629 7.57506 7.70078 8.24329 8.42043 8.88092 9.65528 11.04280 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.087121 B = 0.005515 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.313573 B = 5076.136997 C = 5226.515429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.211 3.789 3 C -0.027 4.027 4 C -0.112 4.112 5 C 0.048 3.952 6 N -0.524 5.524 7 C 0.037 3.963 8 C -0.122 4.122 9 C 0.036 3.964 10 H 0.028 0.972 11 C -0.598 4.598 12 H 0.049 0.951 13 C 0.021 3.979 14 N -0.912 5.912 15 Si 1.067 2.933 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.283 1.283 19 C 0.049 3.951 20 H 0.109 0.891 21 H 0.107 0.893 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.273 0.727 31 H 0.065 0.935 32 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 5.788 -9.023 12.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.106 4.106 3 C -0.067 4.067 4 C -0.151 4.151 5 C -0.081 4.081 6 N -0.248 5.248 7 C -0.091 4.091 8 C -0.161 4.161 9 C 0.017 3.983 10 H 0.046 0.954 11 C -0.636 4.636 12 H 0.067 0.933 13 C -0.184 4.184 14 N -0.548 5.548 15 Si 0.895 3.105 16 H -0.215 1.215 17 H -0.216 1.216 18 H -0.208 1.208 19 C -0.077 4.077 20 H 0.127 0.873 21 H 0.125 0.875 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.373 5.029 -8.028 11.417 hybrid contribution -0.366 0.604 -1.336 1.511 sum -6.740 5.633 -9.364 12.839 Atomic orbital electron populations 1.81219 1.13219 1.09124 1.08829 1.29307 0.95410 0.92934 0.92977 1.19332 0.81302 1.04922 1.01154 1.21521 0.96241 1.02224 0.95109 1.22197 0.93678 1.00505 0.91755 1.64730 1.14811 1.14773 1.30510 1.22914 0.99654 0.87823 0.98686 1.22635 0.94881 0.99888 0.98668 1.19698 0.94728 0.90190 0.93721 0.95405 1.21929 0.95499 1.23007 1.23179 0.93303 1.25765 1.05729 0.93825 0.93074 1.70786 1.09185 1.41828 1.32989 0.83575 0.74549 0.76364 0.75996 1.21464 1.21561 1.20819 1.23236 0.84822 1.00258 0.99430 0.87261 0.87465 0.91189 0.90304 0.90842 0.94652 0.94962 0.91916 0.92128 0.92797 0.91496 0.91697 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.11 18.54 42.15 0.78 -5.33 16 2 C 0.21 2.21 15.43 -20.76 -0.32 1.89 16 3 C -0.03 -0.19 5.70 -29.52 -0.17 -0.35 16 4 C -0.11 -1.12 5.22 -26.73 -0.14 -1.26 16 5 C 0.05 0.59 4.76 -3.83 -0.02 0.58 16 6 N -0.52 -9.05 5.27 -230.45 -1.21 -10.27 16 7 C 0.04 0.67 5.79 -2.75 -0.02 0.65 16 8 C -0.12 -2.74 5.34 -25.37 -0.14 -2.87 16 9 C 0.04 0.87 2.62 -89.91 -0.24 0.64 16 10 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 11 C -0.60 -16.27 8.42 -34.44 -0.29 -16.56 16 12 H 0.05 1.32 7.78 -52.49 -0.41 0.91 16 13 C 0.02 0.58 5.33 -17.82 -0.10 0.48 16 14 N -0.91 -26.84 13.42 55.43 0.74 -26.09 16 15 Si 1.07 24.55 29.90 -169.99 -5.08 19.47 16 16 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.05 0.99 5.95 -1.89 -0.01 0.98 16 20 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 0.77 7.52 -51.93 -0.39 0.37 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 25 H 0.04 0.43 7.82 -51.93 -0.41 0.03 16 26 H 0.03 0.54 7.57 -51.93 -0.39 0.14 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.46 7.84 -51.93 -0.41 1.05 16 29 H 0.05 1.25 6.97 -51.93 -0.36 0.89 16 30 H 0.27 7.95 5.53 -40.82 -0.23 7.72 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.04 0.75 7.92 -51.93 -0.41 0.34 16 LS Contribution 268.87 15.07 4.05 4.05 Total: -1.00 -30.83 268.87 -6.90 -37.73 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -4.75 Total: -3.74 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -1.43 Total: -15.82 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.31 Total: -41.69 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.83 -6.90 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397602075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.026 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds