Wall clock time and date at job start Mon Mar 30 2020 02:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34676 * 125.98366 * 2 1 4 4 N 1.36884 * 106.81112 * 180.12105 * 3 2 1 5 5 C 1.46500 * 126.39356 * 179.83983 * 4 3 2 6 6 H 1.09004 * 109.46930 * 179.68713 * 5 4 3 7 7 C 1.53004 * 109.46959 * 59.69397 * 5 4 3 8 8 C 1.52997 * 109.47520 * 299.69113 * 5 4 3 9 9 C 1.50701 * 109.47212 * 184.99880 * 8 5 4 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 5 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 5 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47094 * 90.00289 * 13 11 9 15 15 H 1.48505 * 109.47195 * 210.00171 * 13 11 9 16 16 H 1.48493 * 109.47449 * 330.00136 * 13 11 9 17 17 C 1.35044 * 107.20939 * 359.58356 * 4 3 2 18 18 C 1.50701 * 125.65048 * 180.30137 * 17 4 3 19 19 N 1.30503 * 108.69418 * 0.25867 * 17 4 3 20 20 H 1.09003 * 109.46673 * 270.32714 * 1 2 3 21 21 H 1.08997 * 109.47437 * 30.33062 * 1 2 3 22 22 H 1.09003 * 109.46982 * 150.33198 * 1 2 3 23 23 H 1.07994 * 126.59824 * 359.97438 * 3 2 1 24 24 H 1.09004 * 109.46741 * 299.99432 * 7 5 4 25 25 H 1.09000 * 109.47403 * 59.99567 * 7 5 4 26 26 H 1.09001 * 109.46917 * 180.02562 * 7 5 4 27 27 H 1.09002 * 109.47153 * 64.99881 * 8 5 4 28 28 H 1.09001 * 109.46832 * 305.00072 * 8 5 4 29 29 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.47198 * 90.00239 * 18 17 4 31 31 H 1.09007 * 109.46573 * 209.99441 * 18 17 4 32 32 H 1.08992 * 109.46985 * 329.99077 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0898 0.0000 4 7 3.5912 0.6402 -0.0028 5 6 4.7995 1.4686 -0.0071 6 1 5.6803 0.8264 -0.0029 7 6 4.8118 2.3591 1.2370 8 6 4.8129 2.3446 -1.2614 9 6 6.1118 3.1058 -1.3287 10 1 6.8538 2.9773 -0.5545 11 6 6.3534 3.9654 -2.3793 12 7 5.4502 4.1215 -3.3223 13 14 7.9638 4.9084 -2.4630 14 1 8.9670 4.1091 -3.2112 15 1 7.7441 6.2025 -3.1576 16 1 8.4603 5.1632 -1.0870 17 6 3.5450 -0.7094 0.0050 18 6 4.7388 -1.6291 0.0117 19 7 2.2952 -1.0851 0.0067 20 1 -0.3633 0.0059 1.0277 21 1 -0.3634 0.8870 -0.5189 22 1 -0.3633 -0.8930 -0.5087 23 1 1.9750 2.1202 -0.0004 24 1 3.9310 3.0013 1.2328 25 1 4.8022 1.7351 2.1307 26 1 5.7106 2.9758 1.2336 27 1 3.9812 3.0480 -1.2223 28 1 4.7147 1.7146 -2.1455 29 1 5.6200 4.7266 -4.0612 30 1 5.0254 -1.8449 1.0410 31 1 4.4839 -2.5589 -0.4970 32 1 5.5702 -1.1489 -0.5040 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715145820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:56 Heat of formation + Delta-G solvation = 33.803551 kcal Electronic energy + Delta-G solvation = -13609.073791 eV Core-core repulsion = 11376.849655 eV Total energy + Delta-G solvation = -2232.224137 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.58964 -35.70565 -32.85781 -31.96034 -30.31153 -28.67638 -27.18460 -25.34258 -23.71995 -21.08997 -19.74308 -18.86138 -16.66999 -15.67036 -15.09888 -14.60207 -13.98660 -13.57438 -13.09605 -12.93715 -12.74861 -12.50735 -12.17896 -12.05875 -11.80251 -11.77737 -11.42077 -11.09695 -10.95384 -10.63812 -10.26252 -9.94920 -9.51337 -9.27552 -8.74761 -8.53627 -7.63863 -6.17724 -4.23110 2.65474 3.21588 3.28277 3.30074 3.48504 3.56054 4.32041 4.85611 5.17981 5.29393 5.35592 5.67556 5.71524 5.75300 5.79376 5.80586 5.94396 5.99785 6.07714 6.23031 6.30125 6.47189 6.53558 6.63801 7.00499 7.32026 7.38790 7.48342 7.72156 7.89048 8.14249 8.65623 8.81612 9.42095 10.93331 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.043545 B = 0.007890 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.858613 B = 3548.147096 C = 3771.278687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.023 4.023 3 C -0.040 4.040 4 N -0.433 5.433 5 C 0.124 3.876 6 H 0.091 0.909 7 C -0.145 4.145 8 C 0.022 3.978 9 C -0.526 4.526 10 H 0.060 0.940 11 C 0.061 3.939 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.192 3.808 18 C -0.065 4.065 19 N -0.501 5.501 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.166 0.834 24 H 0.055 0.945 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.024 0.976 28 H 0.022 0.978 29 H 0.263 0.737 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 -5.363 6.860 9.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.153 4.153 3 C -0.175 4.175 4 N -0.114 5.114 5 C 0.023 3.977 6 H 0.109 0.891 7 C -0.203 4.203 8 C -0.015 4.015 9 C -0.565 4.565 10 H 0.079 0.921 11 C -0.141 4.141 12 N -0.527 5.527 13 Si 0.724 3.276 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.070 4.070 18 C -0.123 4.123 19 N -0.222 5.222 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.183 0.817 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.074 -5.973 6.698 9.486 hybrid contribution 1.127 1.557 -0.245 1.938 sum -1.946 -4.416 6.453 8.058 Atomic orbital electron populations 1.19903 0.88391 1.02030 1.01311 1.20551 0.96060 0.88810 1.09865 1.22321 0.83424 1.00084 1.11716 1.45838 1.07458 1.06790 1.51297 1.21964 0.83341 0.92663 0.99747 0.89135 1.22017 1.03782 0.99319 0.95157 1.19413 0.98329 0.93862 0.89924 1.21017 1.01658 1.25186 1.08603 0.92141 1.25007 0.96952 0.96742 0.95439 1.69968 1.34200 1.36922 1.11577 0.86524 0.83452 0.79347 0.78304 1.20501 1.21090 1.19731 1.23077 0.94939 0.82329 1.06670 1.20111 0.92132 0.97326 1.02756 1.69995 0.99843 1.30598 1.21762 0.92238 0.91773 0.91820 0.81701 0.92570 0.94043 0.89729 0.95739 0.95953 0.92687 0.90891 0.89822 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.42 36.01 0.38 -0.45 16 2 C -0.02 -0.43 7.09 -82.86 -0.59 -1.02 16 3 C -0.04 -0.76 10.60 -16.56 -0.18 -0.94 16 4 N -0.43 -8.44 2.61 -106.83 -0.28 -8.72 16 5 C 0.12 2.45 2.94 -67.93 -0.20 2.25 16 6 H 0.09 1.70 6.67 -51.93 -0.35 1.36 16 7 C -0.14 -2.56 9.06 37.16 0.34 -2.22 16 8 C 0.02 0.55 4.46 -27.88 -0.12 0.42 16 9 C -0.53 -13.77 8.41 -34.44 -0.29 -14.06 16 10 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 13 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 C 0.19 3.62 7.90 -155.41 -1.23 2.39 16 18 C -0.06 -0.94 10.03 36.01 0.36 -0.58 16 19 N -0.50 -9.93 11.25 -7.07 -0.08 -10.01 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.17 2.86 8.06 -52.49 -0.42 2.44 16 24 H 0.06 0.99 7.95 -51.93 -0.41 0.57 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 27 H 0.02 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.07 7.08 -51.93 -0.37 0.70 16 LS Contribution 271.52 15.07 4.09 4.09 Total: -1.00 -30.30 271.52 -6.97 -37.27 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.79 Total: -0.58 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.63 Total: -12.63 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.38 Total: -43.73 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.30 -6.97 -37.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715145820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.078 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds