Wall clock time and date at job start Mon Mar 30 2020 02:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86795 * 120.00273 * 2 1 4 4 H 1.48495 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47109 * 300.00607 * 3 2 1 6 6 H 1.48507 * 109.46757 * 59.99958 * 3 2 1 7 7 C 1.40251 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99385 * 180.02562 * 7 2 1 9 9 C 1.39904 * 120.00373 * 359.97438 * 7 2 1 10 10 N 1.31371 * 125.56782 * 0.02562 * 9 7 2 11 11 C 1.31381 * 116.61169 * 179.97438 * 10 9 7 12 12 C 1.36106 * 114.28079 * 0.02562 * 11 10 9 13 13 S 1.70888 * 109.77103 * 359.96904 * 12 11 10 14 14 C 1.51327 * 124.79037 * 179.70647 * 12 11 10 15 15 C 1.53055 * 108.70859 * 344.21702 * 14 12 11 16 16 C 1.53122 * 109.14442 * 49.38530 * 15 14 12 17 17 C 1.52363 * 123.21837 * 180.02562 * 11 10 9 18 18 H 0.97003 * 119.99918 * 0.02562 * 1 2 3 19 19 H 1.08993 * 109.61155 * 103.84286 * 14 12 11 20 20 H 1.09005 * 109.60902 * 224.35745 * 14 12 11 21 21 H 1.09001 * 109.35556 * 289.56087 * 15 14 12 22 22 H 1.08995 * 109.60601 * 169.36407 * 15 14 12 23 23 H 1.09003 * 109.48256 * 169.18067 * 16 15 14 24 24 H 1.09000 * 109.48454 * 49.14326 * 16 15 14 25 25 H 1.08994 * 109.59027 * 282.18860 * 17 11 10 26 26 H 1.09001 * 109.58838 * 42.48795 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3463 0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8822 2.3963 1.2126 7 6 2.0081 -1.2147 -0.0005 8 1 3.0882 -1.2146 -0.0001 9 6 1.3086 -2.4263 -0.0005 10 7 0.0011 -2.5537 -0.0005 11 6 -0.4707 -3.7799 -0.0011 12 6 0.4863 -4.7478 -0.0010 13 16 2.0363 -4.0281 -0.0011 14 6 0.2096 -6.2355 0.0049 15 6 -1.2503 -6.4618 0.4047 16 6 -2.1489 -5.5547 -0.4405 17 6 -1.9600 -4.1012 -0.0017 18 1 -0.4850 0.8401 -0.0004 19 1 0.3810 -6.6434 -0.9912 20 1 0.8669 -6.7270 0.7222 21 1 -1.3775 -6.2202 1.4599 22 1 -1.5193 -7.5040 0.2328 23 1 -3.1907 -5.8437 -0.3018 24 1 -1.8806 -5.6551 -1.4922 25 1 -2.3633 -3.9667 1.0019 26 1 -2.4767 -3.4378 -0.6953 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015042710.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:52 Heat of formation + Delta-G solvation = 5.740215 kcal Electronic energy + Delta-G solvation = -11491.419600 eV Core-core repulsion = 9467.179661 eV Total energy + Delta-G solvation = -2024.239940 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.23027 -35.37515 -33.32311 -29.94007 -28.91096 -26.11656 -22.77918 -21.93703 -20.47422 -17.97910 -16.57530 -16.01573 -15.03781 -14.10687 -13.53204 -13.40998 -13.15426 -12.62767 -12.10172 -12.07810 -11.47415 -11.18753 -10.98698 -10.82815 -10.63353 -10.31509 -10.29531 -9.89138 -9.39269 -9.33919 -7.58235 -7.56909 -7.22334 -6.67382 -4.58736 2.52438 2.99230 3.04565 3.04984 3.34618 3.74484 3.86285 4.37716 5.22386 5.45552 5.47466 5.50546 5.89671 6.13691 6.19806 6.24908 6.47729 6.54750 6.58578 6.67590 6.70517 6.88786 6.90217 7.31553 7.70528 8.00789 8.28313 8.60894 9.97797 10.12220 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.056596 B = 0.010002 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.616275 B = 2798.705828 C = 3244.851325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.070 3.930 3 Si 0.921 3.079 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.094 0.906 9 C 0.242 3.758 10 N -0.538 5.538 11 C 0.126 3.874 12 C -0.389 4.389 13 S -0.101 6.101 14 C -0.006 4.006 15 C -0.110 4.110 16 C -0.112 4.112 17 C -0.038 4.038 18 H 0.280 0.720 19 H 0.046 0.954 20 H 0.048 0.952 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 -3.650 0.003 3.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.159 4.159 3 Si 0.744 3.256 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.112 0.888 9 C -0.011 4.011 10 N -0.257 5.257 11 C -0.014 4.014 12 C -0.513 4.513 13 S 0.157 5.843 14 C -0.046 4.046 15 C -0.149 4.149 16 C -0.149 4.149 17 C -0.077 4.077 18 H 0.092 0.908 19 H 0.064 0.936 20 H 0.066 0.934 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.760 -3.489 0.002 3.571 hybrid contribution -0.482 0.485 0.008 0.684 sum -1.242 -3.004 0.009 3.251 Atomic orbital electron populations 1.70023 1.07455 1.28777 1.26631 1.26091 0.95053 1.01059 0.93715 0.86050 0.80726 0.80046 0.78825 1.18041 1.19497 1.19505 1.19029 0.94645 0.88036 1.41581 0.88803 1.23858 0.89368 0.92582 0.95331 1.67231 1.09608 1.18885 1.29930 1.20920 0.95116 0.87958 0.97423 1.23829 0.94808 0.98413 1.34229 1.82950 1.12353 1.08233 1.80756 1.19567 0.94991 0.90977 0.99081 1.21480 0.95513 0.97983 0.99878 1.21473 0.98301 0.95229 0.99944 1.20226 0.91442 0.95083 1.00994 0.90846 0.93555 0.93368 0.92284 0.92768 0.92524 0.92195 0.91692 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.59 11.88 55.56 0.66 -17.93 15 2 C 0.07 1.75 5.50 -17.28 -0.10 1.65 15 3 Si 0.92 17.89 29.56 -169.99 -5.03 12.87 15 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 7 C -0.39 -10.32 9.40 -38.20 -0.36 -10.68 15 8 H 0.09 2.30 7.85 -52.49 -0.41 1.88 15 9 C 0.24 6.76 7.07 -17.13 -0.12 6.64 15 10 N -0.54 -15.36 8.72 -8.48 -0.07 -15.43 15 11 C 0.13 3.20 6.72 -82.73 -0.56 2.64 15 12 C -0.39 -9.43 6.20 -34.77 -0.22 -9.65 15 13 S -0.10 -2.53 23.12 -107.50 -2.49 -5.01 15 14 C -0.01 -0.13 6.24 -27.55 -0.17 -0.30 15 15 C -0.11 -1.83 5.93 -26.64 -0.16 -1.99 15 16 C -0.11 -1.89 5.87 -26.67 -0.16 -2.05 15 17 C -0.04 -0.78 6.28 -27.06 -0.17 -0.95 15 18 H 0.28 6.56 8.29 -40.82 -0.34 6.22 15 19 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 21 H 0.06 1.00 8.10 -51.93 -0.42 0.58 15 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.06 1.03 8.10 -51.93 -0.42 0.61 15 25 H 0.06 1.29 8.14 -51.93 -0.42 0.86 15 26 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 LS Contribution 235.01 15.07 3.54 3.54 Total: -1.00 -29.49 235.01 -8.31 -37.80 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -2.92 Total: -1.15 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.00 Total: -14.68 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.59 Total: -33.37 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -2.49 Total: -5.01 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.49 -8.31 -37.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015042710.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.544 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds