Wall clock time and date at job start Mon Mar 30 2020 02:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86795 * 120.00273 * 2 1 4 4 H 1.48495 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47109 * 300.00607 * 3 2 1 6 6 H 1.48507 * 109.46757 * 59.99958 * 3 2 1 7 7 C 1.40251 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99385 * 180.02562 * 7 2 1 9 9 C 1.39904 * 120.00373 * 359.97438 * 7 2 1 10 10 N 1.31371 * 125.56782 * 0.02562 * 9 7 2 11 11 C 1.31381 * 116.61169 * 179.97438 * 10 9 7 12 12 C 1.36106 * 114.28079 * 0.02562 * 11 10 9 13 13 S 1.70888 * 109.77103 * 359.96904 * 12 11 10 14 14 C 1.51327 * 124.79037 * 179.70647 * 12 11 10 15 15 C 1.53055 * 108.70859 * 344.21702 * 14 12 11 16 16 C 1.53122 * 109.14442 * 49.38530 * 15 14 12 17 17 C 1.52363 * 123.21837 * 180.02562 * 11 10 9 18 18 H 0.97003 * 119.99918 * 0.02562 * 1 2 3 19 19 H 1.08993 * 109.61155 * 103.84286 * 14 12 11 20 20 H 1.09005 * 109.60902 * 224.35745 * 14 12 11 21 21 H 1.09001 * 109.35556 * 289.56087 * 15 14 12 22 22 H 1.08995 * 109.60601 * 169.36407 * 15 14 12 23 23 H 1.09003 * 109.48256 * 169.18067 * 16 15 14 24 24 H 1.09000 * 109.48454 * 49.14326 * 16 15 14 25 25 H 1.08994 * 109.59027 * 282.18860 * 17 11 10 26 26 H 1.09001 * 109.58838 * 42.48795 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3463 0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8822 2.3963 1.2126 7 6 2.0081 -1.2147 -0.0005 8 1 3.0882 -1.2146 -0.0001 9 6 1.3086 -2.4263 -0.0005 10 7 0.0011 -2.5537 -0.0005 11 6 -0.4707 -3.7799 -0.0011 12 6 0.4863 -4.7478 -0.0010 13 16 2.0363 -4.0281 -0.0011 14 6 0.2096 -6.2355 0.0049 15 6 -1.2503 -6.4618 0.4047 16 6 -2.1489 -5.5547 -0.4405 17 6 -1.9600 -4.1012 -0.0017 18 1 -0.4850 0.8401 -0.0004 19 1 0.3810 -6.6434 -0.9912 20 1 0.8669 -6.7270 0.7222 21 1 -1.3775 -6.2202 1.4599 22 1 -1.5193 -7.5040 0.2328 23 1 -3.1907 -5.8437 -0.3018 24 1 -1.8806 -5.6551 -1.4922 25 1 -2.3633 -3.9667 1.0019 26 1 -2.4767 -3.4378 -0.6953 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015042710.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:52 Heat of formation + Delta-G solvation = -11.831046 kcal Electronic energy + Delta-G solvation = -11492.181547 eV Core-core repulsion = 9467.179661 eV Total energy + Delta-G solvation = -2025.001887 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.04160 -37.08416 -35.17108 -31.52870 -30.78379 -27.93188 -24.53145 -23.66559 -22.12913 -19.76489 -18.45634 -17.85667 -16.79253 -15.73350 -15.27976 -14.96813 -14.66611 -14.42219 -13.85239 -13.73651 -13.07834 -12.84333 -12.77691 -12.46500 -12.31490 -11.90936 -11.69673 -11.43388 -11.19555 -11.05693 -9.57277 -9.55665 -9.18814 -8.55699 -6.58143 0.61567 1.30556 1.44249 1.49709 1.61068 1.81180 2.19257 2.48441 3.25227 3.91628 4.06815 4.10394 4.34334 4.59800 4.70708 4.83859 4.88894 5.01140 5.02717 5.10571 5.18566 5.23403 5.48878 5.52554 5.84401 6.06268 6.34920 6.63968 8.04110 8.26567 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.056596 B = 0.010002 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.616275 B = 2798.705828 C = 3244.851325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.026 3.974 3 Si 1.006 2.994 4 H -0.248 1.248 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.417 4.417 8 H 0.103 0.897 9 C 0.204 3.796 10 N -0.575 5.575 11 C 0.092 3.908 12 C -0.390 4.390 13 S -0.104 6.104 14 C -0.010 4.010 15 C -0.104 4.104 16 C -0.104 4.104 17 C -0.036 4.036 18 H 0.290 0.710 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 -4.155 0.016 4.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.200 4.200 3 Si 0.824 3.176 4 H -0.171 1.171 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.460 4.460 8 H 0.121 0.879 9 C -0.049 4.049 10 N -0.295 5.295 11 C -0.046 4.046 12 C -0.513 4.513 13 S 0.154 5.846 14 C -0.049 4.049 15 C -0.142 4.142 16 C -0.141 4.141 17 C -0.076 4.076 18 H 0.101 0.899 19 H 0.075 0.925 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.014 -4.036 0.015 4.162 hybrid contribution -0.409 0.573 0.003 0.704 sum -1.423 -3.463 0.017 3.744 Atomic orbital electron populations 1.70104 1.09439 1.30518 1.27135 1.27199 0.95857 1.04642 0.92292 0.84807 0.79296 0.74293 0.79204 1.17106 1.18592 1.18602 1.19507 0.95368 0.88812 1.42306 0.87858 1.24374 0.90014 0.94090 0.96423 1.67243 1.10222 1.20861 1.31198 1.21684 0.97709 0.87434 0.97803 1.24518 0.93714 1.00826 1.32278 1.82777 1.13500 1.07494 1.80870 1.19761 0.97510 0.87638 1.00025 1.21486 0.93066 1.00226 0.99461 1.21465 1.00718 0.92414 0.99545 1.20356 0.88311 0.97760 1.01177 0.89915 0.92547 0.92617 0.92624 0.88727 0.88703 0.92574 0.91311 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.27 11.88 21.88 0.26 -40.01 15 2 C 0.03 1.29 5.50 85.35 0.47 1.76 15 3 Si 1.01 36.44 29.56 68.60 2.03 38.47 15 4 H -0.25 -8.53 7.11 99.48 0.71 -7.82 15 5 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 6 H -0.26 -9.05 7.11 99.48 0.71 -8.35 15 7 C -0.42 -22.58 9.40 23.16 0.22 -22.36 15 8 H 0.10 5.15 7.85 -2.91 -0.02 5.12 15 9 C 0.20 11.75 7.07 85.17 0.60 12.35 15 10 N -0.57 -33.86 8.72 -180.74 -1.58 -35.43 15 11 C 0.09 4.72 6.72 42.66 0.29 5.01 15 12 C -0.39 -18.84 6.20 25.39 0.16 -18.69 15 13 S -0.10 -5.31 23.12 -56.49 -1.31 -6.62 15 14 C -0.01 -0.36 6.24 30.07 0.19 -0.17 15 15 C -0.10 -3.11 5.93 30.65 0.18 -2.93 15 16 C -0.10 -3.21 5.87 30.63 0.18 -3.03 15 17 C -0.04 -1.48 6.28 30.38 0.19 -1.29 15 18 H 0.29 13.78 8.29 -92.71 -0.77 13.01 15 19 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 20 H 0.06 1.97 8.14 -2.38 -0.02 1.95 15 21 H 0.05 1.72 8.10 -2.39 -0.02 1.70 15 22 H 0.09 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 24 H 0.06 1.79 8.10 -2.39 -0.02 1.77 15 25 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 26 H 0.06 2.52 8.14 -2.39 -0.02 2.51 15 Total: -1.00 -65.42 235.01 3.05 -62.36 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.17 Total: 10.56 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 2.47 Total: -29.33 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -1.32 Total: -75.44 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.31 Total: -6.62 kcal Total: -65.42 3.05 -62.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015042710.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.533 kcal (2) G-P(sol) polarization free energy of solvation -65.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds