Wall clock time and date at job start Mon Mar 30 2020 02:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31158 * 1 3 3 Si 1.86799 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47012 * 275.15029 * 3 2 1 5 5 H 1.48494 * 109.47189 * 35.14796 * 3 2 1 6 6 H 1.48498 * 109.47209 * 155.15059 * 3 2 1 7 7 C 1.39200 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99588 * 340.12724 * 7 2 1 9 9 N 1.37019 * 120.00193 * 160.13216 * 7 2 1 10 10 C 1.35606 * 119.53469 * 331.74534 * 9 7 2 11 11 C 1.38039 * 120.32702 * 180.26099 * 10 9 7 12 12 C 1.47354 * 120.26990 * 179.76937 * 11 10 9 13 13 O 1.21524 * 119.99650 * 359.44315 * 12 11 10 14 14 O 1.34764 * 119.99827 * 179.72530 * 12 11 10 15 15 C 1.41710 * 119.45928 * 359.48827 * 11 10 9 16 16 C 1.36000 * 119.11068 * 0.25771 * 15 11 10 17 17 C 1.34547 * 119.53516 * 151.49494 * 9 7 2 18 18 O 1.21947 * 119.73086 * 0.02562 * 17 9 7 19 19 H 0.97002 * 119.99842 * 359.97438 * 1 2 3 20 20 H 1.07995 * 119.83666 * 0.02562 * 10 9 7 21 21 H 0.96701 * 116.99853 * 180.02562 * 14 12 11 22 22 H 1.07999 * 120.44005 * 180.27062 * 15 11 10 23 23 H 1.08010 * 120.18252 * 180.02562 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 14 2.2456 1.6177 0.0000 4 1 2.3843 2.1092 -1.3944 5 1 1.5018 2.6188 0.8060 6 1 3.5934 1.4111 0.5883 7 6 2.0076 -1.2055 -0.0005 8 1 1.5158 -2.1131 0.3170 9 7 3.3166 -1.2406 -0.4038 10 6 3.7641 -0.3286 -1.3021 11 6 5.0783 -0.3523 -1.7237 12 6 5.5619 0.6362 -2.7036 13 8 4.8002 1.4705 -3.1515 14 8 6.8474 0.6115 -3.1073 15 6 5.9601 -1.3313 -1.2020 16 6 5.4888 -2.2319 -0.2984 17 6 4.1412 -2.1764 0.1008 18 8 3.7167 -2.9834 0.9105 19 1 -0.4850 0.8401 0.0004 20 1 3.0880 0.4177 -1.6923 21 1 7.1183 1.2803 -3.7512 22 1 6.9925 -1.3616 -1.5176 23 1 6.1459 -2.9853 0.1107 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021508707.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:51 Heat of formation + Delta-G solvation = -114.862288 kcal Electronic energy + Delta-G solvation = -13471.831926 eV Core-core repulsion = 10863.776304 eV Total energy + Delta-G solvation = -2608.055622 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 209.052 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.49216 -40.82148 -37.91806 -36.90418 -36.24698 -34.33058 -31.14244 -28.11602 -26.17724 -24.23982 -22.57487 -20.68812 -18.88703 -18.63425 -18.16114 -17.59219 -17.11483 -16.63810 -16.27526 -15.75659 -15.07134 -14.93646 -14.56110 -13.85132 -13.57902 -13.18911 -12.94843 -12.64725 -12.40822 -12.07338 -11.78416 -11.57218 -11.08639 -10.78301 -9.15703 -9.10503 -6.79296 -0.19076 0.29749 1.10069 1.12894 1.23894 1.75888 1.78549 1.85964 2.31046 2.44760 2.97753 3.65153 3.99027 4.06237 4.30092 4.48510 4.97777 5.14949 5.24089 5.42442 5.58334 5.68169 5.94084 6.18574 6.55005 7.12394 7.22968 8.00934 Molecular weight = 209.05amu Principal moments of inertia in cm(-1) A = 0.027877 B = 0.016717 C = 0.011187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.160765 B = 1674.514085 C = 2502.276946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.046 3.954 3 Si 0.920 3.080 4 H -0.236 1.236 5 H -0.250 1.250 6 H -0.255 1.255 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.308 5.308 10 C 0.117 3.883 11 C -0.269 4.269 12 C 0.558 3.442 13 O -0.565 6.565 14 O -0.495 6.495 15 C 0.027 3.973 16 C -0.278 4.278 17 C 0.459 3.541 18 O -0.608 6.608 19 H 0.306 0.694 20 H 0.156 0.844 21 H 0.433 0.567 22 H 0.183 0.817 23 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 5.203 -5.896 14.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.168 4.168 3 Si 0.740 3.260 4 H -0.160 1.160 5 H -0.175 1.175 6 H -0.179 1.179 7 C -0.500 4.500 8 H 0.114 0.886 9 N 0.005 4.995 10 C -0.024 4.024 11 C -0.276 4.276 12 C 0.405 3.595 13 O -0.459 6.459 14 O -0.308 6.308 15 C 0.006 3.994 16 C -0.301 4.301 17 C 0.269 3.731 18 O -0.497 6.497 19 H 0.117 0.883 20 H 0.173 0.827 21 H 0.295 0.705 22 H 0.200 0.800 23 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 11.064 4.640 -5.157 13.059 hybrid contribution -0.360 0.873 -0.106 0.950 sum 10.704 5.513 -5.263 13.140 Atomic orbital electron populations 1.69597 1.07728 1.32009 1.36621 1.26145 0.96262 1.01716 0.92686 0.86114 0.79922 0.78472 0.81450 1.16037 1.17492 1.17925 1.19613 0.84388 0.98684 1.47279 0.88614 1.41717 1.10395 1.21490 1.25919 1.22301 0.96823 0.93846 0.89471 1.18253 0.93602 1.05735 1.10036 1.19925 0.80092 0.81013 0.78462 1.90870 1.57756 1.39814 1.57471 1.84475 1.26471 1.59019 1.60861 1.21546 1.00183 0.88199 0.89481 1.21831 0.93362 1.07340 1.07544 1.18152 0.88510 0.82884 0.83579 1.90761 1.78589 1.42408 1.37986 0.88294 0.82712 0.70507 0.79965 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.85 13.94 21.69 0.30 -43.55 14 2 C 0.05 2.40 5.31 85.02 0.45 2.85 14 3 Si 0.92 39.18 24.63 68.60 1.69 40.87 14 4 H -0.24 -9.62 6.69 99.48 0.67 -8.95 14 5 H -0.25 -9.83 7.11 99.48 0.71 -9.13 14 6 H -0.26 -11.03 6.91 99.48 0.69 -10.34 14 7 C -0.37 -20.92 9.52 84.11 0.80 -20.12 14 8 H 0.10 6.08 7.68 -2.91 -0.02 6.05 14 9 N -0.31 -15.57 2.54 -474.84 -1.20 -16.78 14 10 C 0.12 5.16 7.09 84.06 0.60 5.76 14 11 C -0.27 -9.77 5.88 -20.07 -0.12 -9.89 14 12 C 0.56 17.52 8.26 70.22 0.58 18.10 14 13 O -0.56 -21.19 17.11 19.76 0.34 -20.85 14 14 O -0.49 -10.08 12.73 -56.75 -0.72 -10.80 14 15 C 0.03 0.85 9.66 22.61 0.22 1.07 14 16 C -0.28 -10.44 9.95 22.34 0.22 -10.22 14 17 C 0.46 22.91 7.35 84.87 0.62 23.54 14 18 O -0.61 -35.12 16.77 -5.14 -0.09 -35.21 14 19 H 0.31 14.26 8.30 -92.71 -0.77 13.49 14 20 H 0.16 6.94 3.92 -2.91 -0.01 6.92 14 21 H 0.43 4.35 9.11 -74.06 -0.67 3.68 14 22 H 0.18 3.89 7.68 -2.91 -0.02 3.87 14 23 H 0.17 5.27 8.06 -2.91 -0.02 5.24 14 Total: -1.00 -68.62 216.19 4.23 -64.39 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.54 Total: 10.83 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 3.37 Total: 11.09 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.90 Total: -60.33 kcal Atomic # 8 Polarization: -66.39 SS G_CDS: -0.47 Total: -66.86 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.69 Total: 40.87 kcal Total: -68.62 4.23 -64.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021508707.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.473 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds