Wall clock time and date at job start Mon Mar 30 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99630 * 2 1 4 4 H 1.48506 * 109.47129 * 239.99438 * 3 2 1 5 5 H 1.48492 * 109.47573 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47003 * 119.99746 * 3 2 1 7 7 C 1.37872 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00336 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99871 * 0.02562 * 7 2 1 10 10 S 1.81405 * 109.46997 * 179.97438 * 9 7 2 11 11 C 1.76204 * 102.99675 * 179.97438 * 10 9 7 12 12 C 1.38925 * 119.99948 * 180.02562 * 11 10 9 13 13 C 1.38072 * 119.99150 * 180.02562 * 12 11 10 14 14 C 1.38879 * 120.00435 * 0.02562 * 13 12 11 15 15 N 1.40002 * 119.99150 * 179.97438 * 14 13 12 16 16 C 1.38869 * 120.01075 * 0.23069 * 14 13 12 17 17 C 1.38075 * 120.00471 * 359.49125 * 16 14 13 18 18 H 0.97000 * 119.99861 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.47246 * 59.99550 * 9 7 2 20 20 H 1.09002 * 109.47200 * 299.99163 * 9 7 2 21 21 H 1.08000 * 120.00636 * 359.97438 * 12 11 10 22 22 H 1.07992 * 119.99725 * 180.02562 * 13 12 11 23 23 H 0.97001 * 120.00450 * 0.02562 * 15 14 13 24 24 H 0.97005 * 119.99826 * 179.72433 * 15 14 13 25 25 H 1.08002 * 119.99655 * 179.74253 * 16 14 13 26 26 H 1.08002 * 120.00254 * 180.25249 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3825 -5.2948 0.0013 12 6 1.9371 -6.5686 0.0020 13 6 1.1162 -7.6787 0.0021 14 6 -0.2638 -7.5221 0.0009 15 7 -1.0959 -8.6480 0.0004 16 6 -0.8183 -6.2489 -0.0052 17 6 0.0023 -5.1384 0.0005 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5570 -0.8896 20 1 0.6242 -2.5567 0.8904 21 1 3.0102 -6.6904 0.0017 22 1 1.5471 -8.6689 0.0031 23 1 -0.7087 -9.5373 0.0013 24 1 -2.0598 -8.5387 0.0036 25 1 -1.8914 -6.1274 -0.0103 26 1 -0.4290 -4.1483 -0.0001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070601869.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:10 Heat of formation + Delta-G solvation = -8.739102 kcal Electronic energy + Delta-G solvation = -10809.986575 eV Core-core repulsion = 8785.118765 eV Total energy + Delta-G solvation = -2024.867810 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.06055 -35.40099 -35.25438 -32.00837 -30.64650 -29.48824 -25.41655 -23.51318 -23.02447 -19.06614 -18.14419 -17.66927 -17.57624 -16.67229 -15.41404 -15.10271 -14.93739 -14.73472 -14.43848 -14.11631 -14.06584 -13.41445 -12.74903 -12.55032 -12.09178 -11.90509 -11.83967 -11.60340 -10.86311 -10.75441 -9.91266 -9.32606 -8.34894 -7.76565 -6.49475 0.47009 0.55395 1.01824 1.40355 1.43838 1.52791 1.96443 2.36313 2.88542 2.99679 3.06140 3.95417 4.09003 4.46153 4.62116 4.77727 4.88434 4.90165 5.10413 5.31333 5.33757 5.54405 5.56399 5.83601 5.87778 6.57566 6.62199 7.09425 7.18967 8.77292 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.071787 B = 0.006734 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.949740 B = 4156.724201 C = 4531.528238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.016 3.984 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.084 3.916 10 S -0.186 6.186 11 C -0.151 4.151 12 C -0.063 4.063 13 C -0.177 4.177 14 C 0.209 3.791 15 N -0.864 5.864 16 C -0.186 4.186 17 C -0.104 4.104 18 H 0.271 0.729 19 H 0.017 0.983 20 H 0.017 0.983 21 H 0.136 0.864 22 H 0.157 0.843 23 H 0.409 0.591 24 H 0.406 0.594 25 H 0.136 0.864 26 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 -15.129 0.007 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.063 4.063 10 S 0.057 5.943 11 C -0.265 4.265 12 C -0.087 4.087 13 C -0.201 4.201 14 C 0.101 3.899 15 N -0.406 5.406 16 C -0.210 4.210 17 C -0.128 4.128 18 H 0.080 0.920 19 H 0.035 0.965 20 H 0.035 0.965 21 H 0.154 0.846 22 H 0.174 0.826 23 H 0.240 0.760 24 H 0.235 0.765 25 H 0.154 0.846 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.225 -14.837 0.003 14.839 hybrid contribution -1.501 0.811 0.006 1.706 sum -1.726 -14.026 0.009 14.132 Atomic orbital electron populations 1.70061 1.07769 1.28757 1.49635 1.25951 0.95920 1.03156 0.93531 0.85283 0.78190 0.76875 0.79437 1.18964 1.20024 1.18956 1.20974 0.93606 0.90061 1.53568 0.91606 1.20893 0.94616 0.92748 0.98084 1.84881 1.17927 0.98630 1.92885 1.21722 0.96208 0.97249 1.11306 1.20740 1.00317 0.89584 0.98052 1.20766 0.91242 0.99238 1.08877 1.17813 0.90884 0.87681 0.93522 1.42385 1.08220 1.05174 1.84787 1.20620 0.99949 0.90745 1.09713 1.21059 0.92691 0.99028 1.00010 0.91968 0.96522 0.96518 0.84647 0.82563 0.76028 0.76457 0.84588 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.19 13.29 21.45 0.28 -54.90 15 2 C 0.02 0.89 5.46 84.65 0.46 1.35 15 3 Si 0.98 44.09 29.54 68.60 2.03 46.11 15 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 15 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 15 7 C -0.54 -31.85 9.13 25.60 0.23 -31.61 15 8 H 0.07 3.78 7.71 -2.91 -0.02 3.76 15 9 C 0.08 4.69 4.09 71.24 0.29 4.98 15 10 S -0.19 -8.77 21.84 -56.49 -1.23 -10.01 15 11 C -0.15 -6.09 6.11 22.60 0.14 -5.95 15 12 C -0.06 -2.02 9.78 22.39 0.22 -1.80 15 13 C -0.18 -4.50 9.89 22.38 0.22 -4.28 15 14 C 0.21 5.26 6.76 38.14 0.26 5.52 15 15 N -0.86 -13.56 9.10 -51.21 -0.47 -14.03 15 16 C -0.19 -5.75 9.89 22.38 0.22 -5.53 15 17 C -0.10 -4.11 9.36 22.39 0.21 -3.90 15 18 H 0.27 15.08 8.31 -92.71 -0.77 14.31 15 19 H 0.02 0.98 7.74 -2.39 -0.02 0.96 15 20 H 0.02 0.98 7.74 -2.39 -0.02 0.96 15 21 H 0.14 3.91 8.06 -2.91 -0.02 3.88 15 22 H 0.16 2.76 8.06 -2.91 -0.02 2.73 15 23 H 0.41 4.32 8.84 -92.71 -0.82 3.50 15 24 H 0.41 5.05 8.84 -92.70 -0.82 4.23 15 25 H 0.14 3.57 8.06 -2.91 -0.02 3.55 15 26 H 0.10 4.51 5.87 -2.91 -0.02 4.50 15 Total: -1.00 -66.85 244.78 2.43 -64.43 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -0.44 Total: 9.62 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 2.25 Total: -41.22 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -0.18 Total: -68.93 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.23 Total: -10.01 kcal Total: -66.85 2.43 -64.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070601869.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.687 kcal (2) G-P(sol) polarization free energy of solvation -66.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds