Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30959 * 1 3 3 Si 1.86804 * 120.00205 * 2 1 4 4 H 1.48502 * 109.47032 * 270.00434 * 3 2 1 5 5 H 1.48501 * 109.46514 * 29.99866 * 3 2 1 6 6 H 1.48499 * 109.47348 * 149.99916 * 3 2 1 7 7 C 1.39841 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00237 * 191.03170 * 7 2 1 9 9 C 1.40911 * 119.99988 * 11.02899 * 7 2 1 10 10 C 1.36808 * 123.95150 * 20.96361 * 9 7 2 11 11 S 1.70035 * 110.98606 * 179.76512 * 10 9 7 12 12 C 1.70622 * 93.51137 * 0.28792 * 11 10 9 13 13 C 1.35146 * 111.80334 * 359.70939 * 12 11 10 14 14 C 1.47763 * 108.89249 * 180.21240 * 13 12 11 15 15 O 1.21668 * 124.83244 * 179.97438 * 14 13 12 16 16 N 1.34138 * 110.33835 * 0.02562 * 14 13 12 17 17 C 1.46557 * 108.00574 * 359.97438 * 16 14 13 18 18 H 0.96997 * 120.00067 * 359.97438 * 1 2 3 19 19 H 1.07998 * 124.50147 * 359.97438 * 10 9 7 20 20 H 0.97000 * 125.99922 * 179.97438 * 16 14 13 21 21 H 1.08999 * 110.17630 * 240.90409 * 17 16 14 22 22 H 1.09000 * 110.17500 * 119.09847 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 2.4911 2.0464 -1.4001 5 1 1.4410 2.6526 0.7000 6 1 3.5412 1.4402 0.7000 7 6 2.0089 -1.2110 -0.0005 8 1 3.0739 -1.2197 0.1784 9 6 1.3239 -2.4200 -0.2345 10 6 0.1104 -2.5018 -0.8610 11 16 -0.4090 -4.1169 -0.9740 12 6 0.9734 -4.7269 -0.1815 13 6 1.8295 -3.7403 0.1653 14 6 3.0007 -4.3381 0.8394 15 8 3.9494 -3.7105 1.2710 16 7 2.8695 -5.6714 0.9068 17 6 1.5963 -6.0338 0.2780 18 1 -0.4850 0.8400 0.0004 19 1 -0.4423 -1.6536 -1.2371 20 1 3.5058 -6.2876 1.3023 21 1 0.9465 -6.5262 1.0013 22 1 1.7716 -6.6872 -0.5766 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074306224.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = 4.125295 kcal Electronic energy + Delta-G solvation = -11260.183676 eV Core-core repulsion = 9100.040613 eV Total energy + Delta-G solvation = -2160.143062 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 209.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.81591 -36.01618 -34.92188 -32.46425 -28.76949 -26.17737 -25.77815 -21.56173 -20.88953 -18.40872 -16.93691 -16.33083 -15.39659 -15.11879 -14.78358 -13.94214 -13.37706 -12.66261 -12.52883 -12.09660 -11.59361 -11.12833 -11.10126 -10.92891 -10.69653 -10.08980 -9.47972 -9.18395 -9.03959 -8.74005 -7.43563 -7.19173 -6.60697 -4.29570 1.88050 2.64359 3.01377 3.16221 3.23516 3.54495 3.68976 3.81926 4.08132 4.31226 5.10723 5.36267 5.51760 5.65329 5.67987 6.70499 6.94208 7.29458 7.34974 7.51501 7.69738 8.00423 8.58606 8.84773 8.94625 9.02759 10.35190 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.036869 B = 0.012815 C = 0.009689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.254160 B = 2184.495022 C = 2889.204869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.430 4.430 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.375 4.375 11 S 0.182 5.818 12 C -0.272 4.272 13 C -0.186 4.186 14 C 0.576 3.424 15 O -0.540 6.540 16 N -0.737 5.737 17 C 0.190 3.810 18 H 0.276 0.724 19 H 0.171 0.829 20 H 0.415 0.585 21 H 0.080 0.920 22 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.333 -7.965 -1.397 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.463 4.463 8 H 0.099 0.901 9 C 0.110 3.890 10 C -0.512 4.512 11 S 0.448 5.552 12 C -0.392 4.392 13 C -0.209 4.209 14 C 0.365 3.635 15 O -0.418 6.418 16 N -0.396 5.396 17 C 0.063 3.937 18 H 0.087 0.913 19 H 0.188 0.812 20 H 0.256 0.744 21 H 0.098 0.902 22 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.386 -8.026 -1.816 8.568 hybrid contribution 1.884 1.192 0.895 2.402 sum -0.502 -6.834 -0.921 6.914 Atomic orbital electron populations 1.69774 1.07334 1.28529 1.37623 1.25819 0.94824 1.01117 0.92836 0.86205 0.80466 0.80338 0.79103 1.19472 1.20433 1.18567 1.19139 0.96135 0.89493 1.41498 0.90053 1.17102 0.91484 0.89127 0.91253 1.24875 1.06991 0.96997 1.22359 1.80325 1.17244 1.01638 1.55992 1.25205 1.03667 0.99710 1.10581 1.21468 0.96741 0.95284 1.07386 1.18188 0.85743 0.81622 0.77958 1.90738 1.35466 1.65720 1.49892 1.45715 1.22828 1.08350 1.62667 1.19907 0.84193 0.92769 0.96794 0.91273 0.81232 0.74435 0.90159 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.53 10.79 55.54 0.60 -20.93 14 2 C 0.07 1.85 5.37 -17.32 -0.09 1.75 14 3 Si 0.91 20.18 29.57 -169.99 -5.03 15.15 14 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 14 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 14 6 H -0.26 -5.86 7.11 56.52 0.40 -5.46 14 7 C -0.43 -12.36 9.29 -37.97 -0.35 -12.71 14 8 H 0.08 2.40 7.87 -52.49 -0.41 1.99 14 9 C 0.12 3.29 5.74 -105.89 -0.61 2.68 14 10 C -0.38 -9.58 9.63 30.21 0.29 -9.29 14 11 S 0.18 3.64 22.75 -107.50 -2.45 1.19 14 12 C -0.27 -5.60 7.31 -34.82 -0.25 -5.85 14 13 C -0.19 -4.64 6.76 -103.59 -0.70 -5.34 14 14 C 0.58 13.54 8.34 -12.65 -0.11 13.43 14 15 O -0.54 -14.48 18.05 5.22 0.09 -14.39 14 16 N -0.74 -12.67 6.44 -61.96 -0.40 -13.07 14 17 C 0.19 2.94 7.81 -4.58 -0.04 2.91 14 18 H 0.28 6.74 8.30 -40.82 -0.34 6.40 14 19 H 0.17 4.55 6.27 -52.49 -0.33 4.22 14 20 H 0.42 5.60 8.96 -40.82 -0.37 5.24 14 21 H 0.08 1.04 8.14 -51.93 -0.42 0.61 14 22 H 0.08 1.02 8.14 -51.93 -0.42 0.59 14 LS Contribution 216.86 15.07 3.27 3.27 Total: -1.00 -31.68 216.86 -6.86 -38.54 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -1.09 Total: 2.65 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.86 Total: -12.42 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.20 Total: -34.00 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -2.45 Total: 1.19 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -31.68 -6.86 -38.54 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074306224.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.664 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds