Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30959 * 1 3 3 Si 1.86804 * 120.00205 * 2 1 4 4 H 1.48502 * 109.47032 * 270.00434 * 3 2 1 5 5 H 1.48501 * 109.46514 * 29.99866 * 3 2 1 6 6 H 1.48499 * 109.47348 * 149.99916 * 3 2 1 7 7 C 1.39841 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00237 * 191.03170 * 7 2 1 9 9 C 1.40911 * 119.99988 * 11.02899 * 7 2 1 10 10 C 1.36808 * 123.95150 * 20.96361 * 9 7 2 11 11 S 1.70035 * 110.98606 * 179.76512 * 10 9 7 12 12 C 1.70622 * 93.51137 * 0.28792 * 11 10 9 13 13 C 1.35146 * 111.80334 * 359.70939 * 12 11 10 14 14 C 1.47763 * 108.89249 * 180.21240 * 13 12 11 15 15 O 1.21668 * 124.83244 * 179.97438 * 14 13 12 16 16 N 1.34138 * 110.33835 * 0.02562 * 14 13 12 17 17 C 1.46557 * 108.00574 * 359.97438 * 16 14 13 18 18 H 0.96997 * 120.00067 * 359.97438 * 1 2 3 19 19 H 1.07998 * 124.50147 * 359.97438 * 10 9 7 20 20 H 0.97000 * 125.99922 * 179.97438 * 16 14 13 21 21 H 1.08999 * 110.17630 * 240.90409 * 17 16 14 22 22 H 1.09000 * 110.17500 * 119.09847 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 2.4911 2.0464 -1.4001 5 1 1.4410 2.6526 0.7000 6 1 3.5412 1.4402 0.7000 7 6 2.0089 -1.2110 -0.0005 8 1 3.0739 -1.2197 0.1784 9 6 1.3239 -2.4200 -0.2345 10 6 0.1104 -2.5018 -0.8610 11 16 -0.4090 -4.1169 -0.9740 12 6 0.9734 -4.7269 -0.1815 13 6 1.8295 -3.7403 0.1653 14 6 3.0007 -4.3381 0.8394 15 8 3.9494 -3.7105 1.2710 16 7 2.8695 -5.6714 0.9068 17 6 1.5963 -6.0338 0.2780 18 1 -0.4850 0.8400 0.0004 19 1 -0.4423 -1.6536 -1.2371 20 1 3.5058 -6.2876 1.3023 21 1 0.9465 -6.5262 1.0013 22 1 1.7716 -6.6872 -0.5766 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074306224.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = -20.091365 kcal Electronic energy + Delta-G solvation = -11261.233789 eV Core-core repulsion = 9100.040613 eV Total energy + Delta-G solvation = -2161.193176 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 209.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.46048 -37.86134 -36.72686 -34.34370 -30.52471 -27.97567 -27.53640 -23.23981 -22.70397 -20.21989 -18.59087 -18.31082 -17.17201 -16.61886 -16.50237 -15.67386 -15.11783 -14.37767 -14.22764 -13.83406 -13.41048 -12.98948 -12.94580 -12.69178 -12.52878 -11.91023 -11.40575 -11.11169 -10.83809 -10.24484 -9.23496 -8.99867 -8.57867 -6.34834 0.17172 0.98590 1.19720 1.33127 1.46902 1.67908 1.83875 2.22951 2.38242 2.43382 3.31308 3.63338 3.92082 4.47753 4.58340 5.01548 5.06987 5.23611 5.64640 5.76220 5.97143 6.14896 6.52378 6.82536 6.94345 7.37114 8.38403 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.036869 B = 0.012815 C = 0.009689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.254160 B = 2184.495022 C = 2889.204869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.031 3.969 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.273 1.273 7 C -0.477 4.477 8 H 0.052 0.948 9 C 0.082 3.918 10 C -0.411 4.411 11 S 0.285 5.715 12 C -0.245 4.245 13 C -0.257 4.257 14 C 0.565 3.435 15 O -0.596 6.596 16 N -0.708 5.708 17 C 0.188 3.812 18 H 0.286 0.714 19 H 0.149 0.851 20 H 0.436 0.564 21 H 0.128 0.872 22 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 -10.228 -1.769 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.182 4.182 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.198 1.198 7 C -0.511 4.511 8 H 0.070 0.930 9 C 0.074 3.926 10 C -0.548 4.548 11 S 0.552 5.448 12 C -0.366 4.366 13 C -0.279 4.279 14 C 0.354 3.646 15 O -0.479 6.479 16 N -0.366 5.366 17 C 0.063 3.937 18 H 0.096 0.904 19 H 0.166 0.834 20 H 0.280 0.720 21 H 0.146 0.854 22 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.531 -10.359 -2.197 11.163 hybrid contribution 2.099 1.717 0.961 2.877 sum -1.431 -8.642 -1.236 8.847 Atomic orbital electron populations 1.69816 1.08244 1.29842 1.37717 1.26578 0.95764 1.03872 0.91957 0.85227 0.78618 0.76300 0.79644 1.18169 1.18388 1.19769 1.19234 0.95210 0.91877 1.44736 0.92975 1.17552 0.92713 0.90500 0.91870 1.24895 1.06720 1.00704 1.22481 1.79756 1.14959 0.96274 1.53847 1.26054 1.02429 1.01466 1.06636 1.21516 0.99537 0.95336 1.11555 1.18295 0.84942 0.83540 0.77863 1.90690 1.37237 1.67386 1.52591 1.45536 1.23783 1.06155 1.61161 1.20458 0.83290 0.90395 0.99584 0.90378 0.83372 0.71993 0.85445 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.69 10.79 21.82 0.24 -45.46 14 2 C 0.03 1.73 5.37 85.21 0.46 2.19 14 3 Si 0.98 42.92 29.57 68.60 2.03 44.95 14 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 14 5 H -0.26 -10.45 7.11 99.48 0.71 -9.75 14 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 14 7 C -0.48 -29.26 9.29 23.31 0.22 -29.04 14 8 H 0.05 3.35 7.87 -2.91 -0.02 3.33 14 9 C 0.08 4.74 5.74 -20.68 -0.12 4.62 14 10 C -0.41 -21.34 9.63 67.48 0.65 -20.70 14 11 S 0.29 10.63 22.75 -56.49 -1.29 9.34 14 12 C -0.25 -9.35 7.31 25.35 0.19 -9.16 14 13 C -0.26 -12.93 6.76 -19.19 -0.13 -13.06 14 14 C 0.56 26.64 8.34 86.86 0.72 27.36 14 15 O -0.60 -33.38 18.05 -4.25 -0.08 -33.46 14 16 N -0.71 -22.11 6.44 -468.52 -3.02 -25.13 14 17 C 0.19 4.75 7.81 86.00 0.67 5.43 14 18 H 0.29 14.17 8.30 -92.71 -0.77 13.40 14 19 H 0.15 8.22 6.27 -2.91 -0.02 8.20 14 20 H 0.44 10.19 8.96 -92.71 -0.83 9.36 14 21 H 0.13 2.32 8.14 -2.39 -0.02 2.30 14 22 H 0.13 2.29 8.14 -2.39 -0.02 2.27 14 Total: -1.00 -75.51 216.86 0.98 -74.53 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.44 Total: 7.58 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 2.66 Total: -32.36 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -2.78 Total: -70.58 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.08 Total: -33.46 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 10.63 SS G_CDS: -1.29 Total: 9.34 kcal Total: -75.51 0.98 -74.53 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074306224.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.442 kcal (2) G-P(sol) polarization free energy of solvation -75.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds