Wall clock time and date at job start Mon Mar 30 2020 02:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 C 1.38308 * 119.96430 * 269.72580 * 11 10 9 13 13 C 1.38264 * 120.15197 * 179.72198 * 12 11 10 14 14 C 1.38125 * 120.07307 * 0.55257 * 13 12 11 15 15 C 1.38891 * 119.92317 * 359.72424 * 14 13 12 16 16 N 1.39674 * 120.07361 * 179.97438 * 15 14 13 17 17 C 1.38085 * 119.96455 * 90.00266 * 11 10 9 18 18 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 20 20 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 21 21 H 1.08004 * 119.92213 * 359.97438 * 12 11 10 22 22 H 1.08001 * 119.96207 * 180.27496 * 13 12 11 23 23 H 1.08001 * 120.04018 * 179.74876 * 14 13 12 24 24 H 0.96997 * 120.00125 * 180.02562 * 16 15 14 25 25 H 0.97000 * 120.00069 * 0.02562 * 16 15 14 26 26 H 1.08000 * 120.03688 * 359.97343 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 6 1.7507 -5.9575 1.1734 13 6 1.2604 -7.2503 1.1718 14 6 1.0159 -7.8963 -0.0244 15 6 1.2578 -7.2436 -1.2263 16 7 1.0122 -7.8941 -2.4377 17 6 1.7451 -5.9426 -1.2210 18 1 -0.4849 0.8401 0.0004 19 1 3.1244 -3.7267 -0.9039 20 1 3.1244 -3.7361 0.8761 21 1 1.9456 -5.4564 2.1101 22 1 1.0726 -7.7572 2.1068 23 1 0.6368 -8.9076 -0.0251 24 1 1.1818 -7.4374 -3.2765 25 1 0.6720 -8.8025 -2.4403 26 1 1.9338 -5.4322 -2.1539 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077019260.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:09 Heat of formation + Delta-G solvation = -12.067016 kcal Electronic energy + Delta-G solvation = -10802.779274 eV Core-core repulsion = 8777.767155 eV Total energy + Delta-G solvation = -2025.012119 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.20101 -35.64708 -34.60669 -33.09826 -29.64158 -28.18571 -27.31035 -23.17881 -22.20626 -19.68768 -17.68361 -17.47729 -16.89641 -16.67302 -16.18920 -15.34667 -14.98775 -14.52189 -14.04551 -13.88853 -13.53988 -13.16018 -12.89412 -12.76580 -12.28212 -12.04543 -11.71538 -11.24368 -11.14193 -10.43547 -9.50005 -8.67328 -8.37422 -8.32988 -6.13899 0.44163 0.77368 1.33324 1.41144 1.48692 1.84980 2.28109 2.96694 3.07582 3.13750 3.32706 3.93318 4.03747 4.32766 4.43046 4.60684 4.71895 4.82635 5.06865 5.17096 5.39196 5.45689 5.69318 5.89718 6.06490 6.17792 6.67389 7.04429 7.09844 8.71945 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.064742 B = 0.006783 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.382898 B = 4127.162405 C = 4252.529725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.017 3.983 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.073 0.927 9 S -0.175 6.175 10 C -0.058 4.058 11 C -0.025 4.025 12 C -0.185 4.185 13 C -0.071 4.071 14 C -0.205 4.205 15 C 0.213 3.787 16 N -0.868 5.868 17 C -0.204 4.204 18 H 0.272 0.728 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.115 0.885 22 H 0.148 0.852 23 H 0.147 0.853 24 H 0.403 0.597 25 H 0.409 0.591 26 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.278 -14.369 -1.877 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.692 4.692 8 H 0.092 0.908 9 S 0.055 5.945 10 C -0.205 4.205 11 C -0.027 4.027 12 C -0.207 4.207 13 C -0.089 4.089 14 C -0.228 4.228 15 C 0.107 3.893 16 N -0.409 5.409 17 C -0.229 4.229 18 H 0.081 0.919 19 H 0.087 0.913 20 H 0.090 0.910 21 H 0.133 0.867 22 H 0.166 0.834 23 H 0.165 0.835 24 H 0.232 0.768 25 H 0.239 0.761 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.001 -14.397 -1.859 14.654 hybrid contribution 1.565 1.339 -0.351 2.090 sum 3.566 -13.058 -2.210 13.715 Atomic orbital electron populations 1.70156 1.07733 1.28661 1.47906 1.26074 0.96018 1.03066 0.93652 0.85056 0.77931 0.75968 0.79390 1.18893 1.19894 1.18878 1.23087 0.94920 0.92144 1.59077 0.90838 1.84894 1.12591 1.00029 1.96950 1.22206 1.00063 0.94711 1.03556 1.19181 0.96908 0.92369 0.94214 1.20929 1.06243 0.96666 0.96889 1.21129 0.95521 0.93448 0.98799 1.20857 1.09486 1.01841 0.90646 1.17798 0.92655 0.90853 0.87992 1.42358 1.75541 1.18616 1.04363 1.20483 1.09588 0.95251 0.97573 0.91911 0.91258 0.91016 0.86700 0.83396 0.83483 0.76814 0.76108 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.76 13.22 21.65 0.29 -55.48 15 2 C 0.02 0.97 5.49 84.86 0.47 1.44 15 3 Si 0.99 44.50 29.55 68.60 2.03 46.53 15 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 15 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 7 C -0.54 -32.22 9.50 67.96 0.65 -31.57 15 8 H 0.07 4.17 7.80 -2.91 -0.02 4.15 15 9 S -0.18 -9.75 21.42 -56.49 -1.21 -10.96 15 10 C -0.06 -2.53 5.80 71.23 0.41 -2.12 15 11 C -0.02 -0.94 5.13 -19.89 -0.10 -1.05 15 12 C -0.19 -6.30 9.69 22.29 0.22 -6.09 15 13 C -0.07 -1.91 10.04 22.25 0.22 -1.68 15 14 C -0.20 -5.09 9.90 22.40 0.22 -4.87 15 15 C 0.21 5.81 6.75 38.21 0.26 6.07 15 16 N -0.87 -16.61 9.09 -51.37 -0.47 -17.08 15 17 C -0.20 -6.96 9.55 22.40 0.21 -6.74 15 18 H 0.27 15.48 8.31 -92.71 -0.77 14.71 15 19 H 0.07 2.98 8.08 -2.40 -0.02 2.96 15 20 H 0.07 3.08 8.08 -2.39 -0.02 3.06 15 21 H 0.11 3.86 8.06 -2.91 -0.02 3.83 15 22 H 0.15 3.00 8.06 -2.91 -0.02 2.98 15 23 H 0.15 2.62 8.06 -2.91 -0.02 2.60 15 24 H 0.40 6.88 8.84 -92.71 -0.82 6.06 15 25 H 0.41 5.47 8.84 -92.71 -0.82 4.65 15 26 H 0.11 3.85 8.06 -2.91 -0.02 3.83 15 Total: -1.00 -69.78 248.66 2.75 -67.03 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -0.44 Total: 16.56 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 2.56 Total: -46.60 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -0.18 Total: -72.56 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -9.75 SS G_CDS: -1.21 Total: -10.96 kcal Total: -69.78 2.75 -67.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077019260.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.962 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds