Wall clock time and date at job start Mon Mar 30 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31391 * 121.85323 * 2 1 4 4 S 1.75819 * 109.74358 * 180.02562 * 3 2 1 5 5 C 1.76136 * 90.67487 * 0.02562 * 4 3 2 6 6 N 1.32999 * 142.75696 * 179.97438 * 5 4 3 7 7 N 1.28376 * 110.02704 * 179.72352 * 6 5 4 8 8 C 1.33008 * 109.70357 * 0.45604 * 7 6 5 9 9 C 1.39671 * 126.56963 * 179.82382 * 8 7 6 10 10 H 1.08002 * 120.00544 * 179.69076 * 9 8 7 11 11 C 1.40006 * 119.99488 * 359.40460 * 9 8 7 12 12 N 1.30894 * 120.00416 * 0.28256 * 11 9 8 13 13 Si 1.86803 * 119.99778 * 180.27724 * 11 9 8 14 14 H 1.48504 * 109.47118 * 60.00524 * 13 11 9 15 15 H 1.48498 * 109.47326 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47374 * 300.00630 * 13 11 9 17 17 N 1.35388 * 109.18768 * 359.97438 * 5 4 3 18 18 H 1.08996 * 109.47094 * 269.97464 * 1 2 3 19 19 H 1.08998 * 109.46901 * 29.97553 * 1 2 3 20 20 H 1.08998 * 109.46867 * 149.97735 * 1 2 3 21 21 H 1.08003 * 125.12727 * 0.02638 * 3 2 1 22 22 H 0.96996 * 120.00462 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2004 1.1160 0.0000 4 16 3.9195 0.7472 -0.0007 5 6 3.5703 -0.9792 -0.0018 6 7 4.1493 -2.1765 -0.0031 7 7 3.2549 -3.0974 0.0026 8 6 2.0442 -2.5467 -0.0019 9 6 0.8223 -3.2232 -0.0015 10 1 -0.1033 -2.6666 -0.0005 11 6 0.7972 -4.6230 -0.0084 12 7 1.9189 -5.2977 -0.0097 13 14 -0.8370 -5.5279 -0.0157 14 1 -1.6070 -5.1493 -1.2278 15 1 -0.5919 -6.9925 -0.0219 16 1 -1.6113 -5.1611 1.1971 17 7 2.2288 -1.1618 -0.0010 18 1 -0.3633 -0.0005 1.0276 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3633 -0.8898 -0.5142 21 1 1.7781 2.1101 0.0004 22 1 1.9015 -6.2675 -0.0142 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077091552.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:31 Heat of formation + Delta-G solvation = 75.752854 kcal Electronic energy + Delta-G solvation = -11425.348691 eV Core-core repulsion = 9300.604384 eV Total energy + Delta-G solvation = -2124.744307 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 209.032 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.28396 -38.18810 -35.78600 -32.25835 -31.71259 -28.67923 -27.74567 -24.12719 -22.95468 -21.10529 -19.68935 -18.04738 -17.00623 -16.97481 -16.28177 -15.31905 -14.95059 -14.35370 -14.10969 -13.88486 -13.26436 -13.03536 -12.66410 -12.44517 -12.09212 -11.89741 -11.87672 -11.60782 -10.90939 -10.73915 -9.99600 -8.71708 -8.67916 -6.63745 0.30013 0.34163 1.06260 1.37438 1.39356 1.56726 1.65145 2.03408 2.26185 2.27056 3.20221 3.79333 4.26290 4.43910 4.61219 4.69646 4.75568 4.94628 5.11655 5.17280 5.60107 5.84648 6.07179 6.58901 6.74693 8.26727 8.41477 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.049471 B = 0.011583 C = 0.009434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.852500 B = 2416.721431 C = 2967.424162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.087 3.913 3 C -0.246 4.246 4 S 0.146 5.854 5 C -0.006 4.006 6 N -0.308 5.308 7 N -0.376 5.376 8 C 0.320 3.680 9 C -0.449 4.449 10 H 0.115 0.885 11 C 0.023 3.977 12 N -0.780 5.780 13 Si 1.014 2.986 14 H -0.249 1.249 15 H -0.270 1.270 16 H -0.249 1.249 17 N -0.479 5.479 18 H 0.090 0.910 19 H 0.122 0.878 20 H 0.064 0.936 21 H 0.231 0.769 22 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.503 9.762 -0.025 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.023 4.023 3 C -0.383 4.383 4 S 0.389 5.611 5 C -0.377 4.377 6 N -0.152 5.152 7 N -0.221 5.221 8 C 0.079 3.921 9 C -0.489 4.489 10 H 0.133 0.867 11 C -0.199 4.199 12 N -0.404 5.404 13 Si 0.831 3.169 14 H -0.173 1.173 15 H -0.194 1.194 16 H -0.173 1.173 17 N -0.173 5.173 18 H 0.109 0.891 19 H 0.141 0.859 20 H 0.083 0.917 21 H 0.248 0.752 22 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.025 9.109 -0.024 10.922 hybrid contribution -1.998 -0.669 0.008 2.107 sum -8.023 8.440 -0.016 11.645 Atomic orbital electron populations 1.20832 0.84728 1.05151 1.04521 1.19693 0.97705 0.83096 1.01801 1.25118 0.94496 1.02315 1.16391 1.83498 1.05590 0.85866 1.86195 1.27832 0.85910 1.02935 1.21025 1.74284 1.27917 0.94548 1.18474 1.75393 0.95658 1.19047 1.32009 1.22304 0.97066 0.75528 0.97209 1.18898 0.90226 0.92458 1.47275 0.86681 1.27184 1.03122 0.97762 0.91811 1.70167 1.30833 1.09677 1.29713 0.84798 0.74768 0.76590 0.80769 1.17279 1.19412 1.17275 1.44948 1.06478 1.06955 1.58917 0.89100 0.85928 0.91743 0.75216 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.54 9.93 71.24 0.71 -1.83 14 2 C 0.09 3.25 6.75 41.37 0.28 3.53 14 3 C -0.25 -7.40 10.83 67.40 0.73 -6.67 14 4 S 0.15 5.36 23.37 -56.49 -1.32 4.04 14 5 C -0.01 -0.33 9.04 179.41 1.62 1.29 14 6 N -0.31 -18.93 12.29 -56.66 -0.70 -19.63 14 7 N -0.38 -24.33 10.47 -54.27 -0.57 -24.90 14 8 C 0.32 18.72 7.72 132.77 1.02 19.74 14 9 C -0.45 -23.61 9.12 23.04 0.21 -23.40 14 10 H 0.12 5.23 5.85 -2.91 -0.02 5.21 14 11 C 0.02 1.16 5.50 85.26 0.47 1.63 14 12 N -0.78 -43.60 11.94 21.85 0.26 -43.34 14 13 Si 1.01 35.97 29.56 68.60 2.03 38.00 14 14 H -0.25 -8.24 7.11 99.48 0.71 -7.53 14 15 H -0.27 -9.29 7.11 99.48 0.71 -8.59 14 16 H -0.25 -8.24 7.11 99.48 0.71 -7.53 14 17 N -0.48 -24.24 3.24 -339.94 -1.10 -25.35 14 18 H 0.09 2.22 8.14 -2.39 -0.02 2.20 14 19 H 0.12 2.19 8.10 -2.39 -0.02 2.17 14 20 H 0.06 2.00 6.15 -2.39 -0.01 1.99 14 21 H 0.23 4.21 8.06 -2.91 -0.02 4.18 14 22 H 0.29 14.55 8.30 -92.71 -0.77 13.78 14 Total: -1.00 -75.90 215.67 4.90 -71.00 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.26 Total: 5.89 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.04 Total: -5.71 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -2.11 Total: -113.21 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.32 Total: 4.04 kcal Total: -75.90 4.90 -71.00 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077091552.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.749 kcal (2) G-P(sol) polarization free energy of solvation -75.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds