Wall clock time and date at job start Mon Mar 30 2020 02:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30683 * 123.22414 * 2 1 4 4 C 1.29526 * 117.63078 * 180.25145 * 3 2 1 5 5 C 1.50690 * 124.56090 * 179.76360 * 4 3 2 6 6 C 1.53000 * 117.50063 * 59.70047 * 5 4 3 7 7 C 1.53002 * 60.02940 * 252.49714 * 6 5 4 8 8 S 1.70886 * 110.87363 * 359.49882 * 4 3 2 9 9 C 1.38583 * 123.22357 * 179.71148 * 2 1 3 10 10 C 1.40033 * 126.25654 * 359.97438 * 9 2 1 11 11 H 1.07998 * 120.00207 * 359.97438 * 10 9 2 12 12 C 1.40079 * 120.00369 * 179.97438 * 10 9 2 13 13 N 1.30860 * 119.99742 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00056 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47292 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46906 * 119.99722 * 14 12 10 17 17 H 1.48503 * 109.46653 * 239.99325 * 14 12 10 18 18 H 1.09005 * 109.47054 * 270.29642 * 1 2 3 19 19 H 1.09001 * 109.47275 * 30.28670 * 1 2 3 20 20 H 1.08990 * 109.47245 * 150.29331 * 1 2 3 21 21 H 1.09007 * 115.55011 * 205.36836 * 5 4 3 22 22 H 1.09002 * 117.49833 * 359.97438 * 6 5 4 23 23 H 1.09002 * 117.49953 * 144.99860 * 6 5 4 24 24 H 1.09000 * 117.49996 * 107.50493 * 7 6 5 25 25 H 1.08999 * 117.49664 * 252.51862 * 7 6 5 26 26 H 0.97001 * 120.00137 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2230 1.0932 0.0000 4 6 3.5121 0.9670 -0.0050 5 6 4.4838 2.1187 -0.0110 6 6 4.4208 3.1022 1.1594 7 6 3.9138 3.5237 -0.2213 8 16 3.9625 -0.6814 0.0033 9 6 2.2663 -1.1593 0.0058 10 6 1.7754 -2.4707 0.0129 11 1 0.7102 -2.6487 0.0147 12 6 2.6660 -3.5520 0.0178 13 7 3.9567 -3.3365 0.0151 14 14 2.0111 -5.3014 0.0265 15 1 0.5264 -5.2742 0.0277 16 1 2.4926 -6.0162 -1.1828 17 1 2.4939 -6.0045 1.2422 18 1 -0.3633 0.0053 1.0277 19 1 -0.3634 0.8874 -0.5183 20 1 -0.3633 -0.8925 -0.5092 21 1 5.4644 1.9043 -0.4359 22 1 3.6762 2.9164 1.9334 23 1 5.3599 3.5349 1.5043 24 1 2.8360 3.6150 -0.3554 25 1 4.5196 4.2333 -0.7848 26 1 4.5735 -4.0852 0.0181 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082420530.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:13 Heat of formation + Delta-G solvation = 14.550774 kcal Electronic energy + Delta-G solvation = -11304.743508 eV Core-core repulsion = 9280.885623 eV Total energy + Delta-G solvation = -2023.857885 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.76681 -37.58076 -35.91858 -32.08445 -29.80049 -26.53995 -25.26305 -23.14414 -21.70645 -20.43014 -18.67906 -17.70443 -16.93030 -16.17172 -15.42692 -15.03592 -14.50013 -13.95209 -13.65406 -13.43166 -13.23250 -13.03536 -12.56568 -12.53960 -12.29104 -11.99700 -11.67735 -11.27564 -11.19232 -11.11638 -9.75132 -9.64705 -8.96999 -8.83897 -6.46393 0.63662 1.37094 1.49489 1.50374 1.56612 1.98057 2.17911 2.30654 3.01429 3.27806 3.93310 4.15219 4.22699 4.37202 4.74401 4.80671 4.88273 4.93117 4.99849 5.03865 5.21048 5.31200 5.40173 5.48746 5.83310 6.07197 6.46322 6.48266 7.86700 8.00465 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.051686 B = 0.010151 C = 0.008707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.603925 B = 2757.775829 C = 3215.076417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.189 4.189 3 N -0.447 5.447 4 C -0.157 4.157 5 C -0.070 4.070 6 C -0.162 4.162 7 C -0.155 4.155 8 S 0.105 5.895 9 C -0.033 4.033 10 C -0.391 4.391 11 H 0.108 0.892 12 C 0.010 3.990 13 N -0.798 5.798 14 Si 1.013 2.987 15 H -0.250 1.250 16 H -0.260 1.260 17 H -0.261 1.261 18 H 0.043 0.957 19 H 0.048 0.952 20 H 0.059 0.941 21 H 0.116 0.884 22 H 0.067 0.933 23 H 0.122 0.878 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 0.068 0.208 1.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.322 4.322 3 N -0.160 5.160 4 C -0.427 4.427 5 C -0.091 4.091 6 C -0.200 4.200 7 C -0.194 4.194 8 S 0.359 5.641 9 C -0.156 4.156 10 C -0.427 4.427 11 H 0.126 0.874 12 C -0.209 4.209 13 N -0.425 5.425 14 Si 0.831 3.169 15 H -0.173 1.173 16 H -0.185 1.185 17 H -0.185 1.185 18 H 0.061 0.939 19 H 0.067 0.933 20 H 0.078 0.922 21 H 0.134 0.866 22 H 0.086 0.914 23 H 0.140 0.860 24 H 0.094 0.906 25 H 0.137 0.863 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.139 0.105 0.210 2.152 hybrid contribution -1.077 -0.608 0.029 1.237 sum 1.062 -0.503 0.239 1.199 Atomic orbital electron populations 1.19604 0.88155 1.00528 0.99873 1.20505 0.97313 0.86391 1.28031 1.65001 1.05726 1.33656 1.11569 1.25643 0.93291 0.99838 1.23888 1.20140 0.96832 0.87225 1.04941 1.22952 1.03004 1.02779 0.91268 1.22865 1.00888 0.96080 0.99553 1.83779 1.08396 0.97408 1.74540 1.23498 0.94415 0.98313 0.99354 1.19599 0.96466 0.88682 1.37944 0.87449 1.27282 0.94419 1.07457 0.91736 1.69036 1.04305 1.37248 1.31905 0.84641 0.79977 0.72910 0.79324 1.17328 1.18465 1.18514 0.93851 0.93288 0.92194 0.86572 0.91401 0.86016 0.90636 0.86256 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -1.00 10.06 71.24 0.72 -0.28 15 2 C -0.19 -10.19 6.90 42.81 0.30 -9.90 15 3 N -0.45 -24.13 9.93 -176.31 -1.75 -25.88 15 4 C -0.16 -7.96 6.95 88.45 0.61 -7.34 15 5 C -0.07 -2.84 6.28 -11.52 -0.07 -2.91 15 6 C -0.16 -5.56 10.23 30.60 0.31 -5.25 15 7 C -0.16 -5.38 10.12 30.62 0.31 -5.07 15 8 S 0.11 5.50 20.23 -56.49 -1.14 4.36 15 9 C -0.03 -1.79 6.25 22.79 0.14 -1.65 15 10 C -0.39 -19.81 8.93 23.15 0.21 -19.60 15 11 H 0.11 5.08 6.94 -2.91 -0.02 5.06 15 12 C 0.01 0.46 5.50 85.28 0.47 0.93 15 13 N -0.80 -38.23 10.76 21.86 0.24 -37.99 15 14 Si 1.01 34.11 29.56 68.60 2.03 36.14 15 15 H -0.25 -8.13 7.11 99.48 0.71 -7.42 15 16 H -0.26 -8.38 7.11 99.48 0.71 -7.67 15 17 H -0.26 -8.41 7.11 99.48 0.71 -7.70 15 18 H 0.04 1.83 8.14 -2.38 -0.02 1.81 15 19 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 20 H 0.06 2.51 7.15 -2.39 -0.02 2.49 15 21 H 0.12 4.24 8.14 -2.38 -0.02 4.22 15 22 H 0.07 2.62 8.14 -2.39 -0.02 2.60 15 23 H 0.12 3.26 8.14 -2.39 -0.02 3.24 15 24 H 0.07 2.98 7.83 -2.39 -0.02 2.96 15 25 H 0.12 3.24 8.14 -2.39 -0.02 3.22 15 26 H 0.31 13.00 8.30 -92.71 -0.77 12.23 15 Total: -1.00 -60.92 242.07 3.54 -57.37 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.18 Total: 17.07 kcal Atomic # 6 Polarization: -54.06 SS G_CDS: 2.99 Total: -51.07 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -1.52 Total: -63.87 kcal Atomic # 14 Polarization: 34.11 SS G_CDS: 2.03 Total: 36.14 kcal Atomic # 16 Polarization: 5.50 SS G_CDS: -1.14 Total: 4.36 kcal Total: -60.92 3.54 -57.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082420530.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.926 kcal (2) G-P(sol) polarization free energy of solvation -60.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds