Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29521 * 124.56409 * 2 1 4 4 C 1.30674 * 117.63196 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.22492 * 179.97438 * 4 3 2 6 6 C 1.52996 * 117.49785 * 8.64171 * 5 4 3 7 7 C 1.52993 * 60.00077 * 252.51264 * 6 5 4 8 8 C 1.38591 * 113.54949 * 359.97438 * 4 3 2 9 9 C 1.40042 * 126.25157 * 180.02562 * 8 4 3 10 10 H 1.07999 * 119.99946 * 353.40939 * 9 8 4 11 11 C 1.40067 * 119.99881 * 173.41964 * 9 8 4 12 12 N 1.30861 * 120.00138 * 6.42010 * 11 9 8 13 13 Si 1.86799 * 120.00042 * 186.42915 * 11 9 8 14 14 H 1.48503 * 109.47377 * 94.98034 * 13 11 9 15 15 H 1.48502 * 109.47469 * 214.98238 * 13 11 9 16 16 H 1.48500 * 109.47320 * 334.98224 * 13 11 9 17 17 S 1.70886 * 124.55851 * 180.02562 * 2 1 3 18 18 H 1.08992 * 109.47390 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.47296 * 300.00232 * 1 2 3 20 20 H 1.09002 * 109.47284 * 59.99719 * 1 2 3 21 21 H 1.08998 * 115.55264 * 154.34889 * 5 4 3 22 22 H 1.09002 * 117.50472 * 0.02562 * 6 5 4 23 23 H 1.09004 * 117.50167 * 145.02000 * 6 5 4 24 24 H 1.09000 * 117.49987 * 252.51151 * 7 6 5 25 25 H 1.08996 * 117.51849 * 107.48408 * 7 6 5 26 26 H 0.97007 * 120.00246 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2418 1.0666 0.0000 4 6 3.5390 0.9089 -0.0005 5 6 4.5108 2.0607 -0.0011 6 6 3.9410 3.4658 0.2027 7 6 4.4469 3.0382 -1.1764 8 6 3.9353 -0.4191 -0.0004 9 6 5.2543 -0.8897 -0.0004 10 1 6.0751 -0.1961 -0.1078 11 6 5.5090 -2.2600 0.1387 12 7 4.5166 -3.1129 0.1423 13 14 7.2654 -2.8700 0.3193 14 1 7.5903 -3.0239 1.7601 15 1 7.4066 -4.1814 -0.3629 16 1 8.1957 -1.8894 -0.2958 17 16 2.4764 -1.4073 -0.0006 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5139 -0.8900 21 1 5.4917 1.8484 0.4242 22 1 2.8633 3.5573 0.3378 23 1 4.5470 4.1784 0.7625 24 1 5.3857 3.4693 -1.5240 25 1 3.7023 2.8481 -1.9492 26 1 4.6929 -4.0619 0.2390 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082435096.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = 30.774817 kcal Electronic energy + Delta-G solvation = -11394.222973 eV Core-core repulsion = 9371.068615 eV Total energy + Delta-G solvation = -2023.154358 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.05226 -35.26401 -34.28016 -30.55445 -28.38074 -24.68781 -22.59100 -21.50226 -20.31863 -18.65598 -16.80525 -15.68841 -15.26530 -14.55344 -13.45991 -13.25579 -13.03886 -12.30365 -11.96558 -11.77560 -11.52498 -11.33390 -10.95389 -10.84513 -10.70210 -10.44472 -9.84358 -9.70454 -9.48078 -9.08412 -7.82228 -7.71115 -7.04745 -6.99392 -4.54701 2.48348 2.88750 2.94720 3.03948 3.45175 3.63309 3.98563 4.13711 4.68110 5.20124 5.67203 5.84979 5.90384 6.09880 6.34064 6.35478 6.46885 6.50443 6.61708 6.73745 6.91004 6.99031 7.13032 7.32278 7.72639 7.94854 8.34459 8.36079 9.74781 9.81656 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.028430 B = 0.013805 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.646462 B = 2027.773055 C = 2928.505730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 C -0.184 4.184 3 N -0.426 5.426 4 C -0.119 4.119 5 C -0.023 4.023 6 C -0.181 4.181 7 C -0.187 4.187 8 C 0.007 3.993 9 C -0.367 4.367 10 H 0.099 0.901 11 C 0.049 3.951 12 N -0.773 5.773 13 Si 0.935 3.065 14 H -0.265 1.265 15 H -0.272 1.272 16 H -0.257 1.257 17 S 0.119 5.881 18 H 0.052 0.948 19 H 0.048 0.952 20 H 0.048 0.952 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 0.644 -0.024 1.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.454 4.454 3 N -0.139 5.139 4 C -0.253 4.253 5 C -0.043 4.043 6 C -0.218 4.218 7 C -0.225 4.225 8 C -0.117 4.117 9 C -0.404 4.404 10 H 0.117 0.883 11 C -0.173 4.173 12 N -0.400 5.400 13 Si 0.759 3.241 14 H -0.190 1.190 15 H -0.197 1.197 16 H -0.180 1.180 17 S 0.371 5.629 18 H 0.071 0.929 19 H 0.067 0.933 20 H 0.067 0.933 21 H 0.116 0.884 22 H 0.113 0.887 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.769 -0.134 -0.014 0.781 hybrid contribution 1.317 0.368 0.079 1.370 sum 2.086 0.234 0.065 2.100 Atomic orbital electron populations 1.19701 0.89246 1.00024 1.00370 1.25819 0.99453 0.94507 1.25577 1.64853 1.05272 1.33240 1.10508 1.18933 0.88529 0.90925 1.26936 1.19836 0.97032 0.87080 1.00387 1.22788 1.01301 0.98366 0.99345 1.22877 1.01626 1.05808 0.92141 1.22978 0.96935 0.93879 0.97902 1.19181 0.92014 0.92461 1.36784 0.88319 1.26243 1.01028 0.96780 0.93254 1.69045 1.33493 1.04962 1.32489 0.85795 0.79893 0.78849 0.79592 1.18994 1.19700 1.18032 1.83972 0.96379 1.08694 1.73829 0.92946 0.93322 0.93276 0.88357 0.88706 0.90413 0.90238 0.89715 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.67 10.47 36.01 0.38 -0.29 15 2 C -0.18 -4.61 7.36 -13.25 -0.10 -4.70 15 3 N -0.43 -11.25 9.81 -7.08 -0.07 -11.32 15 4 C -0.12 -3.12 6.52 -82.95 -0.54 -3.66 15 5 C -0.02 -0.51 5.76 -91.78 -0.53 -1.04 15 6 C -0.18 -3.56 10.09 -26.74 -0.27 -3.83 15 7 C -0.19 -3.69 10.23 -26.74 -0.27 -3.96 15 8 C 0.01 0.17 6.24 -38.78 -0.24 -0.07 15 9 C -0.37 -9.24 8.96 -38.22 -0.34 -9.58 15 10 H 0.10 2.34 7.09 -52.49 -0.37 1.97 15 11 C 0.05 1.13 5.49 -17.28 -0.09 1.04 15 12 N -0.77 -18.52 10.80 55.56 0.60 -17.92 15 13 Si 0.94 17.27 29.57 -169.99 -5.03 12.25 15 14 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 15 H -0.27 -4.90 7.11 56.52 0.40 -4.49 15 16 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 17 S 0.12 3.03 20.25 -107.50 -2.18 0.85 15 18 H 0.05 0.95 8.12 -51.93 -0.42 0.53 15 19 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 20 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.10 2.10 7.45 -51.93 -0.39 1.71 15 22 H 0.09 2.01 7.76 -51.93 -0.40 1.60 15 23 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 24 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 25 H 0.08 1.78 8.14 -51.93 -0.42 1.36 15 26 H 0.30 6.35 8.30 -40.82 -0.34 6.02 15 LS Contribution 242.28 15.07 3.65 3.65 Total: -1.00 -27.91 242.28 -7.86 -35.77 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -2.83 Total: 2.81 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -2.01 Total: -26.09 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.53 Total: -29.24 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.18 Total: 0.85 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.91 -7.86 -35.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082435096.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.549 kcal (2) G-P(sol) polarization free energy of solvation -27.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds