Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29521 * 124.56409 * 2 1 4 4 C 1.30674 * 117.63196 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.22492 * 179.97438 * 4 3 2 6 6 C 1.52996 * 117.49785 * 8.64171 * 5 4 3 7 7 C 1.52993 * 60.00077 * 252.51264 * 6 5 4 8 8 C 1.38591 * 113.54949 * 359.97438 * 4 3 2 9 9 C 1.40042 * 126.25157 * 180.02562 * 8 4 3 10 10 H 1.07999 * 119.99946 * 353.40939 * 9 8 4 11 11 C 1.40067 * 119.99881 * 173.41964 * 9 8 4 12 12 N 1.30861 * 120.00138 * 6.42010 * 11 9 8 13 13 Si 1.86799 * 120.00042 * 186.42915 * 11 9 8 14 14 H 1.48503 * 109.47377 * 94.98034 * 13 11 9 15 15 H 1.48502 * 109.47469 * 214.98238 * 13 11 9 16 16 H 1.48500 * 109.47320 * 334.98224 * 13 11 9 17 17 S 1.70886 * 124.55851 * 180.02562 * 2 1 3 18 18 H 1.08992 * 109.47390 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.47296 * 300.00232 * 1 2 3 20 20 H 1.09002 * 109.47284 * 59.99719 * 1 2 3 21 21 H 1.08998 * 115.55264 * 154.34889 * 5 4 3 22 22 H 1.09002 * 117.50472 * 0.02562 * 6 5 4 23 23 H 1.09004 * 117.50167 * 145.02000 * 6 5 4 24 24 H 1.09000 * 117.49987 * 252.51151 * 7 6 5 25 25 H 1.08996 * 117.51849 * 107.48408 * 7 6 5 26 26 H 0.97007 * 120.00246 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2418 1.0666 0.0000 4 6 3.5390 0.9089 -0.0005 5 6 4.5108 2.0607 -0.0011 6 6 3.9410 3.4658 0.2027 7 6 4.4469 3.0382 -1.1764 8 6 3.9353 -0.4191 -0.0004 9 6 5.2543 -0.8897 -0.0004 10 1 6.0751 -0.1961 -0.1078 11 6 5.5090 -2.2600 0.1387 12 7 4.5166 -3.1129 0.1423 13 14 7.2654 -2.8700 0.3193 14 1 7.5903 -3.0239 1.7601 15 1 7.4066 -4.1814 -0.3629 16 1 8.1957 -1.8894 -0.2958 17 16 2.4764 -1.4073 -0.0006 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5139 -0.8900 21 1 5.4917 1.8484 0.4242 22 1 2.8633 3.5573 0.3378 23 1 4.5470 4.1784 0.7625 24 1 5.3857 3.4693 -1.5240 25 1 3.7023 2.8481 -1.9492 26 1 4.6929 -4.0619 0.2390 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082435096.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = 15.217786 kcal Electronic energy + Delta-G solvation = -11394.897577 eV Core-core repulsion = 9371.068615 eV Total energy + Delta-G solvation = -2023.828961 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.89146 -36.95765 -36.10913 -32.35204 -30.19004 -26.50091 -24.42358 -23.06973 -22.08270 -20.53243 -18.67435 -17.47822 -17.04101 -16.14836 -15.20010 -14.98418 -14.75784 -14.06548 -13.66087 -13.45038 -13.21380 -12.92423 -12.68138 -12.57187 -12.25463 -11.99044 -11.54013 -11.41329 -11.17367 -10.87581 -9.75342 -9.65072 -8.94409 -8.83765 -6.44356 0.65380 1.37355 1.50128 1.53913 1.55974 1.96786 2.17690 2.30970 2.92273 3.45037 4.02401 4.18438 4.23941 4.48352 4.72382 4.83037 4.85756 4.88919 4.94875 5.03751 5.25356 5.33702 5.42627 5.53199 5.84959 6.07936 6.46310 6.48668 7.87536 8.00724 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.028430 B = 0.013805 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.646462 B = 2027.773055 C = 2928.505730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 C -0.200 4.200 3 N -0.445 5.445 4 C -0.146 4.146 5 C -0.054 4.054 6 C -0.164 4.164 7 C -0.171 4.171 8 C -0.028 4.028 9 C -0.388 4.388 10 H 0.107 0.893 11 C 0.010 3.990 12 N -0.797 5.797 13 Si 1.012 2.988 14 H -0.260 1.260 15 H -0.262 1.262 16 H -0.250 1.250 17 S 0.099 5.901 18 H 0.070 0.930 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.104 0.896 22 H 0.075 0.925 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.065 0.935 26 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 0.729 0.045 2.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.470 4.470 3 N -0.158 5.158 4 C -0.280 4.280 5 C -0.075 4.075 6 C -0.201 4.201 7 C -0.209 4.209 8 C -0.151 4.151 9 C -0.424 4.424 10 H 0.124 0.876 11 C -0.209 4.209 12 N -0.423 5.423 13 Si 0.830 3.170 14 H -0.184 1.184 15 H -0.186 1.186 16 H -0.173 1.173 17 S 0.351 5.649 18 H 0.089 0.911 19 H 0.077 0.923 20 H 0.078 0.922 21 H 0.122 0.878 22 H 0.094 0.906 23 H 0.130 0.870 24 H 0.131 0.869 25 H 0.084 0.916 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.114 -0.039 0.049 2.115 hybrid contribution 0.857 0.307 0.054 0.912 sum 2.970 0.268 0.103 2.984 Atomic orbital electron populations 1.19790 0.86284 1.01590 1.01339 1.26586 1.01434 0.93973 1.25004 1.64942 1.05711 1.33743 1.11385 1.19537 0.89148 0.92054 1.27218 1.19940 0.96882 0.87371 1.03269 1.22802 1.00647 0.97069 0.99585 1.22888 1.02533 1.04114 0.91325 1.23413 0.97975 0.94536 0.99147 1.19547 0.91732 0.93891 1.37250 0.87558 1.27272 1.05574 0.96102 0.91938 1.69072 1.35703 1.05862 1.31671 0.84691 0.74003 0.78550 0.79745 1.18408 1.18570 1.17345 1.83789 0.96899 1.09575 1.74658 0.91115 0.92258 0.92209 0.87775 0.90633 0.86994 0.86863 0.91621 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.19 10.47 71.24 0.75 -0.45 15 2 C -0.20 -10.13 7.36 88.45 0.65 -9.48 15 3 N -0.44 -23.85 9.81 -176.30 -1.73 -25.58 15 4 C -0.15 -7.76 6.52 42.82 0.28 -7.48 15 5 C -0.05 -2.40 5.76 -11.54 -0.07 -2.47 15 6 C -0.16 -6.21 10.09 30.59 0.31 -5.90 15 7 C -0.17 -6.50 10.23 30.59 0.31 -6.19 15 8 C -0.03 -1.50 6.24 22.79 0.14 -1.36 15 9 C -0.39 -19.57 8.96 23.15 0.21 -19.36 15 10 H 0.11 5.02 7.09 -2.91 -0.02 5.00 15 11 C 0.01 0.48 5.49 85.28 0.47 0.95 15 12 N -0.80 -37.95 10.80 21.86 0.24 -37.72 15 13 Si 1.01 34.01 29.57 68.60 2.03 36.04 15 14 H -0.26 -8.48 7.11 99.48 0.71 -7.77 15 15 H -0.26 -8.30 7.11 99.48 0.71 -7.59 15 16 H -0.25 -8.10 7.11 99.48 0.71 -7.39 15 17 S 0.10 5.12 20.25 -56.49 -1.14 3.98 15 18 H 0.07 2.50 8.12 -2.39 -0.02 2.48 15 19 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 20 H 0.06 2.22 8.14 -2.39 -0.02 2.20 15 21 H 0.10 4.39 7.45 -2.39 -0.02 4.37 15 22 H 0.08 3.16 7.76 -2.39 -0.02 3.14 15 23 H 0.11 3.45 8.14 -2.38 -0.02 3.43 15 24 H 0.11 3.51 8.14 -2.39 -0.02 3.49 15 25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 15 26 H 0.31 12.96 8.30 -92.70 -0.77 12.19 15 Total: -1.00 -60.20 242.28 3.62 -56.58 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 1.18 Total: 18.44 kcal Atomic # 6 Polarization: -54.79 SS G_CDS: 3.05 Total: -51.74 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -1.49 Total: -63.30 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Atomic # 16 Polarization: 5.12 SS G_CDS: -1.14 Total: 3.98 kcal Total: -60.20 3.62 -56.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082435096.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.800 kcal (2) G-P(sol) polarization free energy of solvation -60.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds