Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47207 * 2 1 4 4 H 1.09000 * 109.47244 * 304.99920 * 3 2 1 5 5 C 1.53001 * 109.47328 * 65.00046 * 3 2 1 6 6 N 1.46496 * 109.47396 * 185.00039 * 3 2 1 7 7 C 1.34945 * 126.03927 * 275.00048 * 6 3 2 8 8 C 1.35319 * 107.75059 * 179.97438 * 7 6 3 9 9 C 1.39871 * 107.91553 * 359.97438 * 8 7 6 10 10 C 1.50700 * 125.89426 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47062 * 124.99865 * 10 9 8 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 N 1.30831 * 108.20639 * 0.26363 * 9 8 7 20 20 H 1.08995 * 109.47397 * 300.00052 * 1 2 3 21 21 H 1.08998 * 109.46943 * 60.00249 * 1 2 3 22 22 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47170 * 239.99805 * 2 1 3 24 24 H 1.08998 * 109.46943 * 119.99751 * 2 1 3 25 25 H 1.08997 * 109.47556 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.47045 * 299.99924 * 5 3 2 27 27 H 1.09000 * 109.47061 * 59.99761 * 5 3 2 28 28 H 1.08003 * 126.12657 * 0.03432 * 7 6 3 29 29 H 1.07997 * 126.04075 * 180.02562 * 8 7 6 30 30 H 1.09004 * 109.47406 * 5.00571 * 10 9 8 31 31 H 1.08993 * 109.47274 * 245.00197 * 10 9 8 32 32 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 7 3.5000 1.4442 -0.1204 7 6 4.3805 1.3186 0.8945 8 6 5.6262 1.3688 0.3685 9 6 5.5028 1.5302 -1.0154 10 6 6.6408 1.6349 -1.9977 11 6 6.4766 0.5887 -3.0700 12 1 5.6324 -0.0842 -3.0430 13 6 7.4035 0.4914 -4.0860 14 7 8.4282 1.3150 -4.1223 15 14 7.1996 -0.8048 -5.4155 16 1 8.3172 -0.6972 -6.3875 17 1 7.2103 -2.1547 -4.7964 18 1 5.9093 -0.5932 -6.1193 19 7 4.2288 1.5809 -1.3090 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.9982 3.1543 1.3072 26 1 0.5489 2.1253 1.3969 27 1 2.0699 1.5875 2.1492 28 1 4.1349 1.1983 1.9393 29 1 6.5521 1.2963 0.9197 30 1 7.5856 1.4767 -1.4775 31 1 6.6380 2.6252 -2.4528 32 1 8.5340 1.9883 -3.4321 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082876885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = 53.127113 kcal Electronic energy + Delta-G solvation = -13344.796721 eV Core-core repulsion = 11113.410517 eV Total energy + Delta-G solvation = -2231.386204 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.54003 -36.42199 -33.53986 -31.37032 -29.42027 -29.18172 -26.93317 -24.58537 -22.99752 -21.51697 -19.43197 -19.03243 -16.84010 -16.48771 -15.24160 -14.66234 -13.72607 -13.52113 -13.47870 -13.16608 -13.01320 -12.66793 -12.35465 -11.92621 -11.73586 -11.59159 -11.28988 -10.97240 -10.83258 -10.57471 -10.30610 -9.99076 -9.70363 -8.83434 -8.32202 -8.19974 -7.80533 -6.27772 -3.95453 2.55890 3.04676 3.50325 3.53570 3.70912 3.73102 4.55747 4.63812 4.75178 5.00091 5.09614 5.12208 5.27705 5.39034 5.48562 5.53818 5.66419 5.72289 5.81459 5.89352 6.09614 6.16319 6.29109 6.49653 6.70370 7.20035 7.39944 7.56459 7.69130 8.22640 8.57147 8.67170 8.96410 9.73134 11.12330 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.039717 B = 0.007498 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.822020 B = 3733.640791 C = 4260.112293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.163 3.837 4 H 0.096 0.904 5 C -0.163 4.163 6 N -0.386 5.386 7 C 0.037 3.963 8 C -0.277 4.277 9 C 0.118 3.882 10 C 0.076 3.924 11 C -0.583 4.583 12 H 0.051 0.949 13 C 0.014 3.986 14 N -0.915 5.915 15 Si 1.071 2.929 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.288 1.288 19 N -0.293 5.293 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.159 0.841 29 H 0.138 0.862 30 H 0.028 0.972 31 H 0.026 0.974 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.638 -0.596 11.457 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.060 3.940 4 H 0.115 0.885 5 C -0.221 4.221 6 N -0.168 5.168 7 C -0.109 4.109 8 C -0.307 4.307 9 C -0.049 4.049 10 C 0.037 3.963 11 C -0.622 4.622 12 H 0.069 0.931 13 C -0.189 4.189 14 N -0.552 5.552 15 Si 0.899 3.101 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.215 1.215 19 N -0.113 5.113 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.176 0.824 29 H 0.155 0.845 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.980 -1.071 9.167 16.751 hybrid contribution -0.141 0.442 2.255 2.302 sum -14.121 -0.630 11.421 18.173 Atomic orbital electron populations 1.21780 0.94716 1.02129 1.02025 1.21973 0.96282 0.95889 1.03358 1.21085 0.76270 0.97050 0.99593 0.88545 1.22205 1.02386 1.01158 0.96332 1.48855 1.05220 1.57640 1.05105 1.22194 0.90259 1.03991 0.94436 1.21484 0.97042 1.17286 0.94871 1.22986 0.93334 0.94557 0.94000 1.17921 0.88606 0.97976 0.91787 1.21900 1.11932 1.18011 1.10323 0.93057 1.25838 0.92973 1.00457 0.99633 1.70790 1.29537 1.18763 1.36113 0.83513 0.75858 0.74997 0.75687 1.20769 1.21539 1.21487 1.77489 1.05007 1.25816 1.03028 0.92373 0.92327 0.92278 0.90816 0.91590 0.91716 0.90310 0.91804 0.82372 0.84465 0.95361 0.95563 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.14 -1.65 5.73 -26.73 -0.15 -1.81 16 3 C 0.16 2.20 3.40 -67.94 -0.23 1.97 16 4 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 5 C -0.16 -1.60 8.59 37.16 0.32 -1.28 16 6 N -0.39 -7.12 3.53 -54.87 -0.19 -7.31 16 7 C 0.04 0.63 10.59 -17.22 -0.18 0.44 16 8 C -0.28 -5.65 10.72 -40.01 -0.43 -6.08 16 9 C 0.12 2.91 6.43 -82.41 -0.53 2.38 16 10 C 0.08 2.09 4.86 -29.03 -0.14 1.95 16 11 C -0.58 -17.60 9.07 -34.44 -0.31 -17.92 16 12 H 0.05 1.59 7.74 -52.49 -0.41 1.18 16 13 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 14 N -0.92 -28.63 13.65 55.43 0.76 -27.88 16 15 Si 1.07 26.46 29.90 -169.99 -5.08 21.38 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 N -0.29 -7.00 12.54 33.67 0.42 -6.58 16 20 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.59 6.57 -51.93 -0.34 0.25 16 27 H 0.06 0.57 7.16 -51.93 -0.37 0.20 16 28 H 0.16 1.99 7.26 -52.48 -0.38 1.61 16 29 H 0.14 2.51 8.06 -52.49 -0.42 2.09 16 30 H 0.03 0.77 7.99 -51.93 -0.42 0.36 16 31 H 0.03 0.76 8.00 -51.93 -0.42 0.34 16 32 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 LS Contribution 270.87 15.07 4.08 4.08 Total: -1.00 -34.08 270.87 -6.13 -40.22 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -4.72 Total: -2.92 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -1.40 Total: -20.99 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.99 Total: -41.77 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.08 Total: 21.38 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.08 -6.13 -40.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082876885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.346 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds