Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47207 * 2 1 4 4 H 1.09000 * 109.47244 * 304.99920 * 3 2 1 5 5 C 1.53001 * 109.47328 * 65.00046 * 3 2 1 6 6 N 1.46496 * 109.47396 * 185.00039 * 3 2 1 7 7 C 1.34945 * 126.03927 * 275.00048 * 6 3 2 8 8 C 1.35319 * 107.75059 * 179.97438 * 7 6 3 9 9 C 1.39871 * 107.91553 * 359.97438 * 8 7 6 10 10 C 1.50700 * 125.89426 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47062 * 124.99865 * 10 9 8 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 N 1.30831 * 108.20639 * 0.26363 * 9 8 7 20 20 H 1.08995 * 109.47397 * 300.00052 * 1 2 3 21 21 H 1.08998 * 109.46943 * 60.00249 * 1 2 3 22 22 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47170 * 239.99805 * 2 1 3 24 24 H 1.08998 * 109.46943 * 119.99751 * 2 1 3 25 25 H 1.08997 * 109.47556 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.47045 * 299.99924 * 5 3 2 27 27 H 1.09000 * 109.47061 * 59.99761 * 5 3 2 28 28 H 1.08003 * 126.12657 * 0.03432 * 7 6 3 29 29 H 1.07997 * 126.04075 * 180.02562 * 8 7 6 30 30 H 1.09004 * 109.47406 * 5.00571 * 10 9 8 31 31 H 1.08993 * 109.47274 * 245.00197 * 10 9 8 32 32 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 7 3.5000 1.4442 -0.1204 7 6 4.3805 1.3186 0.8945 8 6 5.6262 1.3688 0.3685 9 6 5.5028 1.5302 -1.0154 10 6 6.6408 1.6349 -1.9977 11 6 6.4766 0.5887 -3.0700 12 1 5.6324 -0.0842 -3.0430 13 6 7.4035 0.4914 -4.0860 14 7 8.4282 1.3150 -4.1223 15 14 7.1996 -0.8048 -5.4155 16 1 8.3172 -0.6972 -6.3875 17 1 7.2103 -2.1547 -4.7964 18 1 5.9093 -0.5932 -6.1193 19 7 4.2288 1.5809 -1.3090 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.9982 3.1543 1.3072 26 1 0.5489 2.1253 1.3969 27 1 2.0699 1.5875 2.1492 28 1 4.1349 1.1983 1.9393 29 1 6.5521 1.2963 0.9197 30 1 7.5856 1.4767 -1.4775 31 1 6.6380 2.6252 -2.4528 32 1 8.5340 1.9883 -3.4321 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082876885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = 31.004763 kcal Electronic energy + Delta-G solvation = -13345.756018 eV Core-core repulsion = 11113.410517 eV Total energy + Delta-G solvation = -2232.345501 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.08700 -37.57546 -35.70399 -32.90539 -30.89384 -30.57940 -28.58703 -25.89787 -24.92296 -22.77331 -20.87584 -20.65680 -18.84210 -18.02568 -16.29277 -16.01138 -15.67797 -15.19558 -14.94882 -14.64040 -14.33912 -14.03910 -13.60552 -13.31358 -13.11188 -12.78159 -12.55434 -12.51052 -12.35661 -11.97776 -11.91427 -11.76414 -11.41589 -10.91067 -10.58519 -10.01546 -9.38891 -8.70074 -6.39814 1.06219 1.49333 1.58716 1.71034 1.79553 1.96810 2.55899 3.13239 3.53668 3.79149 3.96916 4.03113 4.08156 4.30332 4.41093 4.55839 4.66984 4.79565 4.88352 4.93340 4.96745 4.97876 5.04720 5.08918 5.19317 5.33603 5.38716 5.76008 5.93035 6.13100 6.34486 6.53980 6.99359 7.37685 8.69809 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.039717 B = 0.007498 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.822020 B = 3733.640791 C = 4260.112293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.148 3.852 4 H 0.085 0.915 5 C -0.154 4.154 6 N -0.376 5.376 7 C 0.068 3.932 8 C -0.304 4.304 9 C 0.082 3.918 10 C 0.081 3.919 11 C -0.599 4.599 12 H 0.037 0.963 13 C -0.034 4.034 14 N -0.932 5.932 15 Si 1.119 2.881 16 H -0.274 1.274 17 H -0.269 1.269 18 H -0.276 1.276 19 N -0.340 5.340 20 H 0.084 0.916 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.218 0.782 29 H 0.152 0.848 30 H 0.020 0.980 31 H 0.001 0.999 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.782 -1.535 13.361 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.047 3.953 4 H 0.103 0.897 5 C -0.211 4.211 6 N -0.158 5.158 7 C -0.079 4.079 8 C -0.333 4.333 9 C -0.084 4.084 10 C 0.042 3.958 11 C -0.638 4.638 12 H 0.055 0.945 13 C -0.232 4.232 14 N -0.570 5.570 15 Si 0.940 3.060 16 H -0.199 1.199 17 H -0.195 1.195 18 H -0.201 1.201 19 N -0.163 5.163 20 H 0.103 0.897 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.234 0.766 29 H 0.169 0.831 30 H 0.038 0.962 31 H 0.019 0.981 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.139 -1.996 11.085 19.681 hybrid contribution 0.401 0.772 1.746 1.951 sum -15.738 -1.224 12.832 20.343 Atomic orbital electron populations 1.21763 0.91912 1.03121 1.03198 1.21929 0.98606 0.94338 1.02056 1.21635 0.73361 0.98540 1.01734 0.89701 1.22212 1.04492 1.00363 0.94082 1.49258 1.07087 1.55559 1.03885 1.22912 0.88508 1.00149 0.96303 1.21700 0.99411 1.19084 0.93130 1.22630 0.92939 0.97386 0.95405 1.17647 0.90095 0.95931 0.92140 1.22141 1.11576 1.18474 1.11576 0.94482 1.27426 0.92129 1.01774 1.01843 1.70910 1.30524 1.19398 1.36135 0.82917 0.76536 0.73219 0.73332 1.19922 1.19469 1.20117 1.77311 1.05250 1.27198 1.06537 0.89718 0.92627 0.91444 0.94584 0.90423 0.92290 0.87206 0.89938 0.76599 0.83056 0.96194 0.98141 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.67 71.98 0.70 -1.39 16 2 C -0.13 -2.88 5.73 30.59 0.18 -2.71 16 3 C 0.15 3.68 3.40 44.99 0.15 3.83 16 4 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 5 C -0.15 -2.33 8.59 71.98 0.62 -1.71 16 6 N -0.38 -13.39 3.53 -327.50 -1.15 -14.54 16 7 C 0.07 2.15 10.59 83.54 0.88 3.04 16 8 C -0.30 -12.28 10.72 21.99 0.24 -12.04 16 9 C 0.08 4.16 6.43 43.10 0.28 4.44 16 10 C 0.08 4.70 4.86 29.10 0.14 4.84 16 11 C -0.60 -37.63 9.07 25.60 0.23 -37.40 16 12 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 13 C -0.03 -2.11 5.46 84.65 0.46 -1.65 16 14 N -0.93 -59.94 13.65 21.45 0.29 -59.65 16 15 Si 1.12 53.57 29.90 68.60 2.05 55.62 16 16 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 N -0.34 -16.70 12.54 -47.39 -0.59 -17.30 16 20 H 0.08 0.82 6.56 -2.39 -0.02 0.80 16 21 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.11 1.04 6.57 -2.39 -0.02 1.02 16 27 H 0.08 0.98 7.16 -2.39 -0.02 0.97 16 28 H 0.22 4.18 7.26 -2.91 -0.02 4.16 16 29 H 0.15 5.46 8.06 -2.91 -0.02 5.43 16 30 H 0.02 1.16 7.99 -2.39 -0.02 1.14 16 31 H 0.00 0.04 8.00 -2.39 -0.02 0.02 16 32 H 0.26 16.62 7.22 -92.71 -0.67 15.95 16 Total: -1.00 -78.00 270.87 5.65 -72.35 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.18 Total: 4.26 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 3.88 Total: -40.74 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -1.46 Total: -91.49 kcal Atomic # 14 Polarization: 53.57 SS G_CDS: 2.05 Total: 55.62 kcal Total: -78.00 5.65 -72.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082876885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.354 kcal (2) G-P(sol) polarization free energy of solvation -78.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds