Wall clock time and date at job start Mon Mar 30 2020 02:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31016 * 1 3 3 Si 1.86800 * 120.00388 * 2 1 4 4 H 1.48498 * 109.47153 * 83.95369 * 3 2 1 5 5 H 1.48498 * 109.47147 * 203.96019 * 3 2 1 6 6 H 1.48505 * 109.46856 * 323.95409 * 3 2 1 7 7 C 1.39728 * 119.99912 * 179.72682 * 2 1 3 8 8 H 1.08002 * 119.99639 * 18.58487 * 7 2 1 9 9 C 1.41153 * 119.99714 * 198.59561 * 7 2 1 10 10 C 1.37693 * 122.86857 * 22.72293 * 9 7 2 11 11 S 1.70992 * 108.84322 * 179.86728 * 10 9 7 12 12 C 1.75896 * 90.80815 * 0.32894 * 11 10 9 13 13 C 1.50697 * 124.99654 * 179.80682 * 12 11 10 14 14 C 1.53787 * 113.61363 * 39.12783 * 13 12 11 15 15 C 1.53948 * 87.02105 * 220.05118 * 14 13 12 16 16 C 1.53782 * 87.11250 * 25.36606 * 15 14 13 17 17 N 1.28799 * 110.01713 * 359.79953 * 12 11 10 18 18 H 0.97000 * 120.00020 * 173.62870 * 1 2 3 19 19 H 1.08005 * 125.57487 * 359.97438 * 10 9 7 20 20 H 1.08996 * 112.85397 * 170.32983 * 13 12 11 21 21 H 1.08997 * 113.61395 * 334.57633 * 14 13 12 22 22 H 1.08999 * 113.60908 * 105.47606 * 14 13 12 23 23 H 1.08997 * 113.54291 * 270.81148 * 15 14 13 24 24 H 1.09005 * 113.74103 * 139.94277 * 15 14 13 25 25 H 1.09001 * 113.61204 * 220.09009 * 16 15 14 26 26 H 1.08997 * 113.61666 * 89.18445 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.3641 2.1201 1.3923 5 1 3.5998 1.4066 -0.5686 6 1 1.5114 2.6124 -0.8239 7 6 2.0088 -1.2101 0.0058 8 1 1.5109 -2.1224 -0.2880 9 6 3.3650 -1.2401 0.3957 10 6 3.9355 -0.2715 1.1910 11 16 5.5815 -0.6615 1.4414 12 6 5.4156 -2.1059 0.4514 13 6 6.5252 -3.0807 0.1522 14 6 7.4499 -3.3486 1.3515 15 6 8.6201 -3.3271 0.3514 16 6 7.7381 -2.4392 -0.5422 17 7 4.2064 -2.2082 0.0199 18 1 -0.4850 -0.8349 -0.0932 19 1 3.4262 0.5921 1.5924 20 1 6.1712 -3.9879 -0.3374 21 1 7.4769 -2.5321 2.0729 22 1 7.2902 -4.3212 1.8171 23 1 8.8397 -4.3023 -0.0829 24 1 9.5095 -2.8213 0.7275 25 1 7.8109 -2.6785 -1.6032 26 1 7.8442 -1.3735 -0.3395 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083136667.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:35 Heat of formation + Delta-G solvation = 39.408916 kcal Electronic energy + Delta-G solvation = -11348.484366 eV Core-core repulsion = 9325.704411 eV Total energy + Delta-G solvation = -2022.779955 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.91755 -37.56748 -33.52639 -29.92440 -26.19936 -25.47965 -25.40181 -21.90266 -19.46058 -19.24804 -17.50870 -16.51313 -15.40466 -14.78708 -14.22184 -13.56283 -13.10746 -12.76215 -12.55273 -12.33268 -11.85482 -11.74536 -10.89626 -10.65015 -10.55126 -10.26279 -10.24255 -9.88753 -9.50436 -9.04392 -8.53789 -8.20532 -7.58848 -7.20595 -4.54259 1.98740 2.62338 3.18016 3.30893 3.40635 3.59611 3.98028 4.08897 4.73609 4.78868 4.80875 5.08033 5.27100 5.38599 5.77589 5.86807 5.90469 5.98772 6.08438 6.26131 6.50079 6.61895 6.83586 7.13633 7.61112 8.10702 8.33059 8.64798 9.19659 10.07938 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.061787 B = 0.009654 C = 0.009027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.060771 B = 2899.734829 C = 3101.121897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.047 3.953 3 Si 1.077 2.923 4 H -0.281 1.281 5 H -0.261 1.261 6 H -0.292 1.292 7 C -0.478 4.478 8 H 0.079 0.921 9 C 0.212 3.788 10 C -0.460 4.460 11 S 0.003 5.997 12 C 0.081 3.919 13 C -0.032 4.032 14 C -0.132 4.132 15 C -0.139 4.139 16 C -0.130 4.130 17 N -0.473 5.473 18 H 0.285 0.715 19 H 0.147 0.853 20 H 0.109 0.891 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.211 -2.711 0.905 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.172 4.172 3 Si 0.905 3.095 4 H -0.208 1.208 5 H -0.186 1.186 6 H -0.220 1.220 7 C -0.513 4.513 8 H 0.098 0.902 9 C 0.090 3.910 10 C -0.598 4.598 11 S 0.251 5.749 12 C -0.202 4.202 13 C -0.054 4.054 14 C -0.171 4.171 15 C -0.177 4.177 16 C -0.169 4.169 17 N -0.188 5.188 18 H 0.097 0.903 19 H 0.164 0.836 20 H 0.127 0.873 21 H 0.105 0.895 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.464 -1.081 1.177 13.559 hybrid contribution -1.141 -1.605 -0.247 1.985 sum 12.324 -2.686 0.930 12.647 Atomic orbital electron populations 1.70619 1.07599 1.33054 1.33269 1.27117 0.95638 1.04117 0.90348 0.83480 0.75834 0.72805 0.77419 1.20797 1.18577 1.22021 1.19901 0.92967 0.97054 1.41420 0.90249 1.18099 0.94021 0.86788 0.92049 1.25256 0.97554 1.13571 1.23466 1.82507 1.12880 1.24338 1.55169 1.27431 0.95646 0.97675 0.99437 1.21120 0.89669 0.96519 0.98108 1.23089 0.95185 1.02483 0.96333 1.22826 0.97030 1.00152 0.97685 1.23028 0.94558 1.00052 0.99277 1.67152 1.01383 1.27685 1.22621 0.90347 0.83591 0.87342 0.89494 0.91063 0.90141 0.91250 0.91097 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.13 13.66 55.54 0.76 -22.38 15 2 C 0.05 1.31 5.46 -17.34 -0.09 1.22 15 3 Si 1.08 25.93 24.88 -169.99 -4.23 21.70 15 4 H -0.28 -6.47 6.73 56.52 0.38 -6.09 15 5 H -0.26 -6.32 6.60 56.52 0.37 -5.95 15 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.48 -13.95 9.77 -37.92 -0.37 -14.32 15 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 15 9 C 0.21 5.89 6.05 -86.16 -0.52 5.37 15 10 C -0.46 -11.90 8.18 30.53 0.25 -11.65 15 11 S 0.00 0.06 21.99 -107.50 -2.36 -2.31 15 12 C 0.08 1.74 6.71 -13.55 -0.09 1.65 15 13 C -0.03 -0.51 4.28 -90.95 -0.39 -0.90 15 14 C -0.13 -1.73 7.60 -25.83 -0.20 -1.93 15 15 C -0.14 -1.51 8.09 -25.83 -0.21 -1.72 15 16 C -0.13 -1.74 7.63 -25.92 -0.20 -1.94 15 17 N -0.47 -12.26 10.65 -8.36 -0.09 -12.35 15 18 H 0.29 7.81 8.73 -40.82 -0.36 7.45 15 19 H 0.15 3.76 4.41 -52.48 -0.23 3.52 15 20 H 0.11 1.70 8.14 -51.93 -0.42 1.28 15 21 H 0.09 1.19 7.20 -51.93 -0.37 0.82 15 22 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 15 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.09 1.21 7.95 -51.93 -0.41 0.80 15 LS Contribution 232.44 15.07 3.50 3.50 Total: -1.00 -30.14 232.44 -7.00 -37.13 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -2.76 Total: -1.07 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -1.82 Total: -24.22 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.67 Total: -34.73 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -4.23 Total: 21.70 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.36 Total: -2.31 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.14 -7.00 -37.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083136667.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.542 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds