Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 115.56112 * 2 1 4 4 C 1.53001 * 117.50180 * 214.30515 * 2 1 3 5 5 C 1.52996 * 117.49828 * 145.68207 * 2 1 3 6 6 H 1.09008 * 117.50073 * 214.98184 * 5 2 1 7 7 C 1.50699 * 117.52172 * 0.02562 * 5 2 1 8 8 N 1.28793 * 124.99733 * 240.02383 * 7 5 2 9 9 C 1.33645 * 116.06323 * 179.97438 * 8 7 5 10 10 C 1.41157 * 122.86315 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00191 * 174.01032 * 10 9 8 12 12 C 1.39718 * 120.00227 * 354.01651 * 10 9 8 13 13 N 1.31023 * 120.00034 * 6.15187 * 12 10 9 14 14 Si 1.86805 * 120.00233 * 186.15689 * 12 10 9 15 15 H 1.48503 * 109.46952 * 89.99778 * 14 12 10 16 16 H 1.48501 * 109.46825 * 209.99625 * 14 12 10 17 17 H 1.48497 * 109.46731 * 329.99745 * 14 12 10 18 18 C 1.37700 * 114.27438 * 0.02562 * 9 8 7 19 19 S 1.70990 * 108.83726 * 359.76181 * 18 9 8 20 20 H 1.09000 * 109.46820 * 154.30259 * 1 2 3 21 21 H 1.08990 * 109.47294 * 274.30124 * 1 2 3 22 22 H 1.08999 * 109.47381 * 34.30421 * 1 2 3 23 23 H 1.09002 * 117.49663 * 145.02105 * 4 2 1 24 24 H 1.08998 * 117.49772 * 359.97438 * 4 2 1 25 25 H 0.96999 * 120.00539 * 180.02562 * 13 12 10 26 26 H 1.08001 * 125.57737 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1716 -0.8750 1.2685 7 6 1.3725 -2.1410 1.4608 8 7 1.3806 -2.3755 2.7271 9 6 0.5384 -3.3211 3.1546 10 6 0.4291 -3.6927 4.5120 11 1 -0.3333 -4.3927 4.8206 12 6 1.3070 -3.1548 5.4565 13 7 2.1520 -2.2168 5.1060 14 14 1.2764 -3.7732 7.2189 15 1 2.2172 -4.9135 7.3598 16 1 1.6852 -2.6781 8.1348 17 1 -0.0975 -4.2195 7.5630 18 6 -0.2135 -3.9020 2.1580 19 16 0.2003 -3.1821 0.6633 20 1 -0.3633 -0.9260 -0.4456 21 1 -0.3633 0.0771 1.0247 22 1 -0.3634 0.8489 -0.5792 23 1 3.1716 -0.8752 -1.2681 24 1 1.6113 -1.8588 -1.2677 25 1 2.7618 -1.8436 5.7615 26 1 -0.9478 -4.6815 2.2982 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083810644.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = 34.970503 kcal Electronic energy + Delta-G solvation = -11407.253947 eV Core-core repulsion = 9384.281528 eV Total energy + Delta-G solvation = -2022.972419 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.96590 -38.41783 -35.09445 -31.27108 -29.42424 -27.63834 -25.61735 -22.55842 -21.81543 -19.96860 -19.41027 -17.09846 -16.97816 -16.58016 -15.51159 -14.90282 -14.61339 -13.99008 -13.83823 -13.51703 -13.20267 -13.02388 -12.80515 -12.52845 -12.38389 -12.12124 -11.52615 -11.40974 -11.08114 -10.89355 -9.91306 -9.74770 -9.17791 -8.48614 -6.41735 0.38640 1.08997 1.35238 1.38860 1.50548 1.74666 2.21609 2.30833 2.95620 3.38779 3.48331 3.81629 4.09464 4.38234 4.49049 4.81936 4.89303 4.93889 5.01201 5.07114 5.14668 5.19629 5.32047 5.47442 5.52976 6.13824 6.52764 6.85263 7.69387 8.41044 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.049047 B = 0.009873 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.738819 B = 2835.399501 C = 3160.243049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.124 4.124 3 H 0.137 0.863 4 C -0.142 4.142 5 C -0.108 4.108 6 H 0.119 0.881 7 C 0.097 3.903 8 N -0.450 5.450 9 C 0.197 3.803 10 C -0.476 4.476 11 H 0.082 0.918 12 C 0.026 3.974 13 N -0.785 5.785 14 Si 0.993 3.007 15 H -0.262 1.262 16 H -0.264 1.264 17 H -0.258 1.258 18 C -0.500 4.500 19 S 0.025 5.975 20 H 0.057 0.943 21 H 0.030 0.970 22 H 0.089 0.911 23 H 0.134 0.866 24 H 0.095 0.905 25 H 0.281 0.719 26 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 4.247 -7.239 8.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.143 4.143 3 H 0.155 0.845 4 C -0.180 4.180 5 C -0.131 4.131 6 H 0.137 0.863 7 C -0.186 4.186 8 N -0.164 5.164 9 C 0.075 3.925 10 C -0.510 4.510 11 H 0.100 0.900 12 C -0.193 4.193 13 N -0.408 5.408 14 Si 0.813 3.187 15 H -0.187 1.187 16 H -0.188 1.188 17 H -0.181 1.181 18 C -0.638 4.638 19 S 0.274 5.726 20 H 0.075 0.925 21 H 0.049 0.951 22 H 0.108 0.892 23 H 0.153 0.847 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.244 4.499 -7.764 9.059 hybrid contribution -0.281 -0.902 1.984 2.198 sum 0.963 3.596 -5.779 6.875 Atomic orbital electron populations 1.21490 0.93199 1.02980 1.00880 1.22594 0.95536 0.94842 1.01364 0.84484 1.23382 1.03885 1.00564 0.90188 1.20599 0.99479 0.98346 0.94672 0.86298 1.27739 0.99093 0.99881 0.91921 1.67304 1.21439 1.16332 1.11298 1.18452 0.89176 0.89245 0.95621 1.19326 1.16057 1.24765 0.90818 0.90031 1.26966 0.93346 0.93457 1.05543 1.70214 1.14674 1.18951 1.36949 0.85053 0.79852 0.78790 0.75001 1.18678 1.18810 1.18143 1.25405 1.21773 1.20396 0.96262 1.81945 1.40958 1.37235 1.12490 0.92452 0.95078 0.89222 0.84746 0.88681 0.90879 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.03 71.98 0.65 -3.13 15 2 C -0.12 -3.44 6.41 -10.79 -0.07 -3.51 15 3 H 0.14 3.02 8.14 -2.39 -0.02 3.00 15 4 C -0.14 -3.73 9.68 30.59 0.30 -3.43 15 5 C -0.11 -3.95 6.33 -11.54 -0.07 -4.02 15 6 H 0.12 4.37 8.14 -2.38 -0.02 4.35 15 7 C 0.10 4.62 6.44 88.55 0.57 5.19 15 8 N -0.45 -25.93 8.49 -180.35 -1.53 -27.46 15 9 C 0.20 11.83 6.46 39.46 0.25 12.08 15 10 C -0.48 -28.11 9.23 23.34 0.22 -27.89 15 11 H 0.08 4.61 7.85 -2.91 -0.02 4.59 15 12 C 0.03 1.41 5.49 85.17 0.47 1.88 15 13 N -0.78 -44.40 11.72 21.79 0.26 -44.14 15 14 Si 0.99 40.51 29.56 68.60 2.03 42.54 15 15 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 17 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 18 C -0.50 -27.33 10.98 67.69 0.74 -26.59 15 19 S 0.02 1.10 20.02 -56.49 -1.13 -0.03 15 20 H 0.06 1.77 6.21 -2.39 -0.01 1.75 15 21 H 0.03 1.09 8.14 -2.39 -0.02 1.07 15 22 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 23 H 0.13 2.58 8.14 -2.39 -0.02 2.57 15 24 H 0.09 2.57 7.16 -2.39 -0.02 2.55 15 25 H 0.28 14.30 8.30 -92.71 -0.77 13.53 15 26 H 0.13 7.09 8.06 -2.91 -0.02 7.07 15 Total: -1.00 -68.34 239.44 3.85 -64.49 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.18 Total: 14.03 kcal Atomic # 6 Polarization: -52.48 SS G_CDS: 3.06 Total: -49.43 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.28 Total: -71.60 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -1.13 Total: -0.03 kcal Total: -68.34 3.85 -64.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083810644.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.460 kcal (2) G-P(sol) polarization free energy of solvation -68.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds