Wall clock time and date at job start Mon Mar 30 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 115.55268 * 2 1 4 4 C 1.53001 * 117.49673 * 145.70838 * 2 1 3 5 5 C 1.52999 * 59.99972 * 107.48709 * 4 2 1 6 6 H 1.09001 * 117.49596 * 107.49124 * 5 4 2 7 7 C 1.50705 * 117.49871 * 252.50529 * 5 4 2 8 8 N 1.28796 * 124.99005 * 188.62136 * 7 5 4 9 9 C 1.33648 * 116.05512 * 179.97438 * 8 7 5 10 10 C 1.41159 * 122.85935 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00171 * 339.82458 * 10 9 8 12 12 C 1.39721 * 119.99872 * 159.82568 * 10 9 8 13 13 N 1.31020 * 119.99897 * 345.00029 * 12 10 9 14 14 Si 1.86801 * 120.00190 * 165.00872 * 12 10 9 15 15 H 1.48494 * 109.47290 * 94.12405 * 14 12 10 16 16 H 1.48502 * 109.47264 * 214.13116 * 14 12 10 17 17 H 1.48507 * 109.46835 * 334.12877 * 14 12 10 18 18 C 1.37695 * 114.27966 * 0.02562 * 9 8 7 19 19 S 1.70995 * 108.83868 * 359.76216 * 18 9 8 20 20 H 1.09000 * 109.47468 * 205.67380 * 1 2 3 21 21 H 1.09000 * 109.47134 * 325.67137 * 1 2 3 22 22 H 1.09003 * 109.47053 * 85.67098 * 1 2 3 23 23 H 1.09006 * 117.49825 * 0.02562 * 4 2 1 24 24 H 1.08998 * 117.50292 * 214.97959 * 4 2 1 25 25 H 0.96997 * 120.00017 * 179.97438 * 13 12 10 26 26 H 1.07996 * 125.58423 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2364 -1.1213 0.7646 5 6 2.2364 -1.1208 -0.7653 6 1 3.1715 -0.8749 -1.2685 7 6 1.3719 -2.1402 -1.4615 8 7 1.3804 -2.3744 -2.7280 9 6 0.5385 -3.3201 -3.1558 10 6 0.4303 -3.6922 -4.5131 11 1 0.7750 -3.0212 -5.2861 12 6 -0.1226 -4.9284 -4.8567 13 7 -0.2688 -5.8570 -3.9440 14 14 -0.6534 -5.2575 -6.6172 15 1 0.4513 -5.9261 -7.3505 16 1 -1.8507 -6.1359 -6.6173 17 1 -0.9827 -3.9717 -7.2834 18 6 -0.2144 -3.9006 -2.1596 19 16 0.2078 -3.1895 -0.6630 20 1 -0.3634 -0.9262 0.4452 21 1 -0.3633 0.8487 0.5795 22 1 -0.3633 0.0776 -1.0248 23 1 1.6111 -1.8592 1.2673 24 1 3.1715 -0.8757 1.2681 25 1 -0.6530 -6.7152 -4.1824 26 1 -0.9486 -4.6800 -2.3001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083810647.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:09 Heat of formation + Delta-G solvation = 48.007271 kcal Electronic energy + Delta-G solvation = -11310.329341 eV Core-core repulsion = 9287.922238 eV Total energy + Delta-G solvation = -2022.407103 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.31356 -36.93206 -33.35074 -29.06271 -28.06365 -25.70438 -24.06197 -21.28727 -20.23548 -18.35141 -16.92927 -16.01150 -15.36058 -14.62249 -13.99685 -13.18567 -13.06195 -12.55671 -12.24166 -11.77572 -11.55770 -11.45846 -11.22238 -11.05148 -10.82333 -10.39509 -9.97512 -9.71282 -9.49707 -9.09023 -8.31483 -7.96554 -7.13007 -6.64635 -4.32741 2.28285 2.83565 3.04311 3.12778 3.19608 3.64985 4.00135 4.05416 4.35013 4.81963 5.04735 5.21765 5.45498 5.58045 5.78663 5.97259 6.07827 6.15236 6.29468 6.36487 6.62808 6.92786 7.24466 7.53825 7.64922 8.32247 8.75776 8.83204 9.49117 10.35587 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.065265 B = 0.008678 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.920253 B = 3225.833363 C = 3372.592175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.141 4.141 3 H 0.106 0.894 4 C -0.172 4.172 5 C -0.065 4.065 6 H 0.120 0.880 7 C 0.076 3.924 8 N -0.470 5.470 9 C 0.201 3.799 10 C -0.426 4.426 11 H 0.079 0.921 12 C 0.069 3.931 13 N -0.808 5.808 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.262 1.262 18 C -0.354 4.354 19 S -0.018 6.018 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.276 0.724 26 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 6.039 6.214 8.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 H 0.124 0.876 4 C -0.210 4.210 5 C -0.087 4.087 6 H 0.137 0.863 7 C -0.204 4.204 8 N -0.185 5.185 9 C 0.080 3.920 10 C -0.462 4.462 11 H 0.097 0.903 12 C -0.146 4.146 13 N -0.436 5.436 14 Si 0.742 3.258 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.494 4.494 19 S 0.230 5.770 20 H 0.085 0.915 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.117 0.883 24 H 0.116 0.884 25 H 0.087 0.913 26 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.835 5.901 6.824 9.060 hybrid contribution -0.306 -0.736 -1.756 1.929 sum 0.529 5.166 5.068 7.256 Atomic orbital electron populations 1.21468 0.92650 1.02011 1.02269 1.22409 0.95914 0.93945 1.03779 0.87573 1.23240 1.02654 1.01693 0.93400 1.20370 0.99114 0.96773 0.92461 0.86262 1.26291 1.01155 1.00741 0.92242 1.66984 1.21714 1.18083 1.11734 1.17884 0.89258 0.89409 0.95471 1.18713 1.35918 1.01227 0.90322 0.90295 1.25722 0.94114 0.95116 0.99663 1.69854 1.34490 1.04149 1.35116 0.86150 0.78638 0.79054 0.81910 1.19736 1.20234 1.18587 1.26008 1.14895 1.16423 0.92053 1.82652 1.41426 1.36417 1.16466 0.91486 0.92640 0.92071 0.88301 0.88380 0.91299 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.03 37.16 0.34 -1.55 15 2 C -0.14 -2.02 6.41 -90.62 -0.58 -2.60 15 3 H 0.11 1.28 8.14 -51.93 -0.42 0.85 15 4 C -0.17 -2.43 9.69 -26.73 -0.26 -2.69 15 5 C -0.06 -1.14 6.33 -91.77 -0.58 -1.72 15 6 H 0.12 1.99 8.14 -51.93 -0.42 1.57 15 7 C 0.08 1.73 6.43 -13.55 -0.09 1.65 15 8 N -0.47 -12.58 10.65 -8.35 -0.09 -12.67 15 9 C 0.20 5.79 6.40 -86.17 -0.55 5.23 15 10 C -0.43 -12.22 9.39 -37.92 -0.36 -12.57 15 11 H 0.08 2.22 7.89 -52.48 -0.41 1.80 15 12 C 0.07 1.85 5.31 -17.34 -0.09 1.76 15 13 N -0.81 -22.04 10.86 55.54 0.60 -21.44 15 14 Si 0.92 19.80 29.58 -169.99 -5.03 14.77 15 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 17 H -0.26 -5.60 7.11 56.52 0.40 -5.19 15 18 C -0.35 -9.67 9.73 30.53 0.30 -9.38 15 19 S -0.02 -0.41 20.06 -107.50 -2.16 -2.57 15 20 H 0.07 1.06 6.24 -51.93 -0.32 0.73 15 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 23 H 0.10 1.46 7.15 -51.93 -0.37 1.09 15 24 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.28 6.85 8.30 -40.82 -0.34 6.52 15 26 H 0.17 4.76 6.37 -52.49 -0.33 4.42 15 LS Contribution 237.85 15.07 3.58 3.58 Total: -1.00 -29.96 237.85 -7.65 -37.61 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -2.69 Total: 2.59 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -1.87 Total: -21.88 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.51 Total: -34.11 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.16 Total: -2.57 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.96 -7.65 -37.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083810647.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.619 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds