Wall clock time and date at job start Mon Mar 30 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46829 * 2 1 4 4 C 1.47198 * 109.46657 * 120.00116 * 2 1 3 5 5 N 2.60797 * 109.46932 * 120.00166 * 2 1 3 6 6 N 1.46906 * 109.47054 * 240.00177 * 2 1 3 7 7 C 1.46897 * 110.99585 * 183.95739 * 6 2 1 8 8 C 1.46896 * 110.99791 * 60.00061 * 6 2 1 9 9 C 1.52998 * 109.46642 * 197.91218 * 8 6 2 10 10 C 1.50703 * 115.56353 * 268.25194 * 9 8 6 11 11 H 1.07999 * 120.00425 * 140.18150 * 10 9 8 12 12 C 1.37883 * 119.99933 * 320.18628 * 10 9 8 13 13 N 1.31510 * 119.99858 * 344.31628 * 12 10 9 14 14 Si 1.86794 * 120.00043 * 164.31875 * 12 10 9 15 15 H 1.48512 * 109.47235 * 59.99918 * 14 12 10 16 16 H 1.48498 * 109.47455 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47362 * 299.99990 * 14 12 10 18 18 C 1.53001 * 117.50126 * 53.94297 * 9 8 6 19 19 C 1.53008 * 60.03149 * 107.47798 * 18 9 8 20 20 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47299 * 300.00194 * 1 2 3 22 22 H 1.09008 * 109.46732 * 60.00208 * 1 2 3 23 23 H 1.09006 * 109.47111 * 299.46915 * 7 6 2 24 24 H 1.08998 * 109.47662 * 59.47311 * 7 6 2 25 25 H 1.08996 * 109.47224 * 179.47384 * 7 6 2 26 26 H 1.09004 * 109.46946 * 77.91857 * 8 6 2 27 27 H 1.08996 * 109.47673 * 317.91223 * 8 6 2 28 28 H 0.97001 * 120.00267 * 185.06031 * 13 12 10 29 29 H 1.09002 * 117.49998 * 214.97516 * 18 9 8 30 30 H 1.09002 * 117.49752 * 359.97438 * 18 9 8 31 31 H 1.08996 * 117.49641 * 107.50185 * 19 18 9 32 32 H 1.09000 * 117.49892 * 252.52382 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2295 2.1294 6 7 2.0197 -0.6925 -1.1995 7 6 3.4851 -0.7946 -1.1870 8 6 1.5487 -0.0263 -2.4211 9 6 1.6819 -0.9832 -3.6074 10 6 2.9796 -0.8980 -4.3690 11 1 3.4570 -1.7990 -4.7249 12 6 3.5575 0.3302 -4.6113 13 7 2.8516 1.4298 -4.4625 14 14 5.3428 0.4323 -5.1509 15 1 5.5167 -0.3044 -6.4287 16 1 5.7208 1.8552 -5.3451 17 1 6.2104 -0.1730 -4.1087 18 6 1.0253 -2.3594 -3.4823 19 6 0.4143 -1.3020 -4.4040 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 3.9188 0.2053 -1.1685 24 1 3.8035 -1.3451 -0.3018 25 1 3.8204 -1.3195 -2.0814 26 1 2.1495 0.8647 -2.6037 27 1 0.5037 0.2586 -2.2997 28 1 3.2343 2.2881 -4.7029 29 1 1.5319 -3.2033 -3.9508 30 1 0.4988 -2.5833 -2.5545 31 1 0.5189 -1.4503 -5.4788 32 1 -0.5141 -0.8300 -4.0825 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854516.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:29 Heat of formation + Delta-G solvation = 62.466926 kcal Electronic energy + Delta-G solvation = -13985.192724 eV Core-core repulsion = 11754.211524 eV Total energy + Delta-G solvation = -2230.981199 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.34029 -36.36499 -34.76806 -32.22384 -30.72750 -26.79744 -25.65228 -24.28939 -21.82544 -20.97769 -18.80406 -17.24299 -16.02896 -15.54023 -14.82480 -14.41186 -13.85156 -13.60477 -12.88930 -12.62522 -12.55623 -12.37768 -11.90479 -11.55950 -11.49609 -11.16933 -11.06484 -10.87968 -10.70827 -10.54331 -10.32658 -10.15534 -9.33705 -8.90850 -8.64123 -8.18631 -7.53576 -6.12111 -4.10328 2.96095 3.04587 3.23520 3.29844 3.33708 4.20003 4.32154 4.63413 4.99577 5.31740 5.40511 5.64751 5.76970 5.92282 6.09757 6.22915 6.27028 6.33146 6.49208 6.61093 6.80508 6.86931 6.94353 7.04643 7.14311 7.41600 7.46142 7.74700 7.75441 7.93666 7.98335 8.44795 8.84564 9.45575 10.90274 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.011400 C = 0.009697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.703708 B = 2455.591035 C = 2886.676575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.168 3.832 3 H 0.077 0.923 4 C 0.232 3.768 5 N -0.450 5.450 6 N -0.526 5.526 7 C 0.027 3.973 8 C 0.082 3.918 9 C 0.060 3.940 10 C -0.486 4.486 11 H 0.060 0.940 12 C 0.072 3.928 13 N -0.877 5.877 14 Si 0.882 3.118 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.191 4.191 19 C -0.202 4.202 20 H 0.069 0.931 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.021 0.979 24 H 0.042 0.958 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.262 0.738 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 0.478 4.440 5.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.056 3.944 3 H 0.095 0.905 4 C -0.086 4.086 5 N -0.128 5.128 6 N -0.252 5.252 7 C -0.121 4.121 8 C -0.044 4.044 9 C 0.059 3.941 10 C -0.523 4.523 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.514 5.514 14 Si 0.710 3.290 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.228 4.228 19 C -0.240 4.240 20 H 0.088 0.912 21 H 0.079 0.921 22 H 0.100 0.900 23 H 0.039 0.961 24 H 0.061 0.939 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.733 -0.565 5.877 6.506 hybrid contribution 1.133 1.076 -0.804 1.757 sum -1.600 0.511 5.073 5.343 Atomic orbital electron populations 1.21879 0.91840 1.03582 1.02756 1.19174 0.96404 0.94634 0.84181 0.90527 1.29199 0.92446 0.92992 0.94010 1.81115 1.09469 1.09459 1.12716 1.62213 1.11077 1.51338 1.00592 1.22464 0.86862 0.99951 1.02830 1.22023 0.98868 0.98015 0.85472 1.18783 0.91330 0.90912 0.93070 1.20555 1.04512 0.92460 1.34817 0.92223 1.24934 0.97458 0.95733 0.94985 1.69873 1.36243 0.98390 1.46900 0.86803 0.85800 0.77063 0.79354 1.20210 1.21271 1.19945 1.22686 1.06331 0.93962 0.99857 1.22994 0.98537 1.05481 0.97005 0.91198 0.92106 0.90012 0.96067 0.93930 0.88286 0.89193 0.92974 0.92736 0.91380 0.90804 0.90781 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.98 37.16 0.33 -1.49 16 2 C 0.17 2.56 2.53 -70.49 -0.18 2.38 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.23 3.79 13.23 -20.76 -0.27 3.52 16 5 N -0.45 -8.11 18.54 42.15 0.78 -7.33 16 6 N -0.53 -9.73 4.31 -238.29 -1.03 -10.76 16 7 C 0.03 0.52 8.99 60.06 0.54 1.06 16 8 C 0.08 1.70 4.63 -3.83 -0.02 1.68 16 9 C 0.06 1.37 1.56 -155.62 -0.24 1.13 16 10 C -0.49 -12.29 7.36 -34.44 -0.25 -12.54 16 11 H 0.06 1.54 7.86 -52.49 -0.41 1.13 16 12 C 0.07 1.80 5.05 -17.82 -0.09 1.71 16 13 N -0.88 -22.62 11.15 55.43 0.62 -22.00 16 14 Si 0.88 19.83 29.57 -169.99 -5.03 14.81 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C -0.19 -4.01 9.70 -26.73 -0.26 -4.27 16 19 C -0.20 -4.38 9.89 -26.69 -0.26 -4.65 16 20 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.08 1.05 6.07 -51.92 -0.32 0.74 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.04 0.77 6.97 -51.93 -0.36 0.41 16 25 H 0.10 2.12 6.20 -51.93 -0.32 1.80 16 26 H 0.09 2.10 5.34 -51.93 -0.28 1.82 16 27 H 0.05 1.00 5.31 -51.93 -0.28 0.73 16 28 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 29 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 31 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.06 1.25 8.03 -51.93 -0.42 0.84 16 LS Contribution 267.91 15.07 4.04 4.04 Total: -1.00 -26.21 267.91 -5.80 -32.01 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.48 Total: 0.70 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.71 Total: -11.46 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.37 Total: -40.09 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.21 -5.80 -32.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854516.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.480 kcal (2) G-P(sol) polarization free energy of solvation -26.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds