Wall clock time and date at job start Mon Mar 30 2020 02:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00028 * 2 1 4 4 C 1.50706 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.40895 * 126.29033 * 90.02764 * 4 3 2 6 6 C 1.34844 * 107.41841 * 179.73472 * 5 4 3 7 7 N 1.36346 * 108.21930 * 359.97438 * 6 5 4 8 8 C 1.46500 * 125.64029 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47340 * 89.96864 * 8 7 6 10 10 C 1.50700 * 109.47010 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00244 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99707 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00321 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99686 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47422 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47058 * 120.00458 * 14 12 10 17 17 H 1.48500 * 109.46931 * 239.99867 * 14 12 10 18 18 C 1.34848 * 126.29193 * 269.70999 * 4 3 2 19 19 H 1.08995 * 109.46657 * 60.00246 * 1 2 3 20 20 H 1.09000 * 109.46583 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47031 * 299.99801 * 1 2 3 22 22 H 1.00903 * 111.00457 * 236.04636 * 2 1 3 23 23 H 1.09001 * 109.47013 * 60.00112 * 3 2 1 24 24 H 1.09007 * 109.47412 * 300.00055 * 3 2 1 25 25 H 1.07998 * 126.29072 * 359.70787 * 5 4 3 26 26 H 1.07994 * 125.89572 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.46917 * 209.97366 * 8 7 6 28 28 H 1.09004 * 109.46684 * 329.96997 * 8 7 6 29 29 H 1.09001 * 109.47283 * 300.00590 * 9 8 7 30 30 H 1.09000 * 109.46682 * 60.00560 * 9 8 7 31 31 H 0.96997 * 119.99843 * 179.97438 * 13 12 10 32 32 H 1.08001 * 125.89182 * 0.22797 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5020 1.3312 0.0006 5 6 4.3361 1.3093 -1.1347 6 6 5.6115 1.2811 -0.6980 7 7 5.5955 1.2853 0.6654 8 6 6.7757 1.2600 1.5330 9 6 7.2210 2.6932 1.8304 10 6 8.4346 2.6671 2.7234 11 1 8.8473 1.7227 3.0463 12 6 9.0180 3.8489 3.1283 13 7 8.5152 4.9989 2.7357 14 14 10.5229 3.8165 4.2347 15 1 10.8890 2.4083 4.5314 16 1 11.6560 4.4881 3.5490 17 1 10.2202 4.5274 5.5029 18 6 4.2995 1.3156 1.0878 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8307 -0.5261 -0.7814 23 1 1.6460 1.8947 0.8900 24 1 1.6459 1.8948 -0.8900 25 1 4.0132 1.3138 -2.1653 26 1 6.4937 1.2597 -1.3206 27 1 6.5292 0.7549 2.4669 28 1 7.5830 0.7251 1.0327 29 1 7.4674 3.1984 0.8964 30 1 6.4137 3.2280 2.3307 31 1 8.9255 5.8303 3.0209 32 1 3.9688 1.3263 2.1159 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085584918.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:00 Heat of formation + Delta-G solvation = 36.664572 kcal Electronic energy + Delta-G solvation = -12955.359578 eV Core-core repulsion = 10723.259504 eV Total energy + Delta-G solvation = -2232.100073 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.59026 -35.99451 -34.01574 -32.15286 -29.55962 -28.48767 -26.33213 -24.51338 -23.03262 -21.36435 -19.52058 -19.07854 -16.88329 -16.10180 -15.30558 -14.70777 -14.43987 -14.00945 -13.63122 -13.42075 -12.75961 -12.67307 -12.36979 -12.16024 -11.79888 -11.41941 -11.27803 -11.03332 -10.94651 -10.69178 -10.14801 -9.85769 -9.34321 -8.49815 -8.38737 -7.84789 -7.53483 -6.13423 -4.19033 2.91813 3.23975 3.31580 3.34961 3.37779 3.72471 4.36701 4.62643 5.22682 5.26054 5.36458 5.46482 5.61649 5.66804 5.73926 5.80051 5.82370 6.04762 6.14572 6.17978 6.52922 6.67052 6.89727 7.09972 7.46555 7.47117 7.50545 7.55594 7.79439 7.90274 8.03489 8.22170 8.87398 9.46448 10.97670 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.068166 B = 0.005354 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.662757 B = 5228.669056 C = 5315.692601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.692 5.692 3 C 0.138 3.862 4 C -0.189 4.189 5 C -0.209 4.209 6 C -0.011 4.011 7 N -0.431 5.431 8 C 0.103 3.897 9 C 0.012 3.988 10 C -0.529 4.529 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.897 3.103 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.015 3.985 19 H 0.017 0.983 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.341 0.659 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.123 0.877 26 H 0.154 0.846 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 -7.682 -5.440 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.323 5.323 3 C 0.009 3.991 4 C -0.196 4.196 5 C -0.234 4.234 6 C -0.143 4.143 7 N -0.103 5.103 8 C -0.017 4.017 9 C -0.025 4.025 10 C -0.568 4.568 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.119 4.119 19 H 0.035 0.965 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.159 0.841 23 H 0.088 0.912 24 H 0.047 0.953 25 H 0.141 0.859 26 H 0.171 0.829 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.822 -7.567 -4.503 13.190 hybrid contribution 0.692 0.473 -0.335 0.903 sum -9.129 -7.094 -4.838 12.533 Atomic orbital electron populations 1.22187 0.88660 1.01364 1.00088 1.60489 1.06599 1.14994 1.50170 1.20130 0.90483 0.88554 0.99892 1.19077 0.93617 1.13918 0.92939 1.20573 0.92280 1.13008 0.97567 1.21714 0.98635 1.10371 0.83586 1.44570 1.06701 1.52803 1.06219 1.22333 0.84101 1.02672 0.92626 1.19444 0.96781 0.88704 0.97617 1.21077 1.12291 0.92788 1.30600 0.92245 1.25012 0.97495 0.95429 0.96230 1.69986 1.40606 0.97388 1.44804 0.86461 0.82540 0.78229 0.80344 1.19603 1.20863 1.20842 1.21552 0.82755 1.08709 0.98845 0.96472 0.91853 0.91910 0.84141 0.91158 0.95252 0.85858 0.82885 0.90463 0.90503 0.95868 0.95841 0.92773 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.70 60.07 0.64 0.91 16 2 N -0.69 -8.79 6.84 -122.42 -0.84 -9.63 16 3 C 0.14 1.93 6.18 -4.98 -0.03 1.90 16 4 C -0.19 -3.15 5.65 -104.82 -0.59 -3.74 16 5 C -0.21 -3.47 10.81 -39.78 -0.43 -3.90 16 6 C -0.01 -0.20 11.43 -16.75 -0.19 -0.39 16 7 N -0.43 -8.26 2.75 -117.13 -0.32 -8.58 16 8 C 0.10 2.09 6.03 -4.04 -0.02 2.06 16 9 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 10 C -0.53 -14.46 9.11 -34.44 -0.31 -14.77 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 14 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.02 0.27 11.35 -16.75 -0.19 0.08 16 19 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.34 4.12 8.81 -39.29 -0.35 3.77 16 23 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 26 H 0.15 2.41 8.06 -52.49 -0.42 1.99 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.15 2.59 8.06 -52.49 -0.42 2.16 16 LS Contribution 278.06 15.07 4.19 4.19 Total: -1.00 -29.80 278.06 -7.59 -37.39 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.96 Total: 2.30 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -1.37 Total: -16.09 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.42 Total: -43.86 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.80 -7.59 -37.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584918.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.050 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds