Wall clock time and date at job start Mon Mar 30 2020 02:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00028 * 2 1 4 4 C 1.50706 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.40895 * 126.29033 * 90.02764 * 4 3 2 6 6 C 1.34844 * 107.41841 * 179.73472 * 5 4 3 7 7 N 1.36346 * 108.21930 * 359.97438 * 6 5 4 8 8 C 1.46500 * 125.64029 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47340 * 89.96864 * 8 7 6 10 10 C 1.50700 * 109.47010 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00244 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99707 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00321 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99686 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47422 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47058 * 120.00458 * 14 12 10 17 17 H 1.48500 * 109.46931 * 239.99867 * 14 12 10 18 18 C 1.34848 * 126.29193 * 269.70999 * 4 3 2 19 19 H 1.08995 * 109.46657 * 60.00246 * 1 2 3 20 20 H 1.09000 * 109.46583 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47031 * 299.99801 * 1 2 3 22 22 H 1.00903 * 111.00457 * 236.04636 * 2 1 3 23 23 H 1.09001 * 109.47013 * 60.00112 * 3 2 1 24 24 H 1.09007 * 109.47412 * 300.00055 * 3 2 1 25 25 H 1.07998 * 126.29072 * 359.70787 * 5 4 3 26 26 H 1.07994 * 125.89572 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.46917 * 209.97366 * 8 7 6 28 28 H 1.09004 * 109.46684 * 329.96997 * 8 7 6 29 29 H 1.09001 * 109.47283 * 300.00590 * 9 8 7 30 30 H 1.09000 * 109.46682 * 60.00560 * 9 8 7 31 31 H 0.96997 * 119.99843 * 179.97438 * 13 12 10 32 32 H 1.08001 * 125.89182 * 0.22797 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5020 1.3312 0.0006 5 6 4.3361 1.3093 -1.1347 6 6 5.6115 1.2811 -0.6980 7 7 5.5955 1.2853 0.6654 8 6 6.7757 1.2600 1.5330 9 6 7.2210 2.6932 1.8304 10 6 8.4346 2.6671 2.7234 11 1 8.8473 1.7227 3.0463 12 6 9.0180 3.8489 3.1283 13 7 8.5152 4.9989 2.7357 14 14 10.5229 3.8165 4.2347 15 1 10.8890 2.4083 4.5314 16 1 11.6560 4.4881 3.5490 17 1 10.2202 4.5274 5.5029 18 6 4.2995 1.3156 1.0878 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8307 -0.5261 -0.7814 23 1 1.6460 1.8947 0.8900 24 1 1.6459 1.8948 -0.8900 25 1 4.0132 1.3138 -2.1653 26 1 6.4937 1.2597 -1.3206 27 1 6.5292 0.7549 2.4669 28 1 7.5830 0.7251 1.0327 29 1 7.4674 3.1984 0.8964 30 1 6.4137 3.2280 2.3307 31 1 8.9255 5.8303 3.0209 32 1 3.9688 1.3263 2.1159 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085584918.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:00 Heat of formation + Delta-G solvation = 18.286603 kcal Electronic energy + Delta-G solvation = -12956.156506 eV Core-core repulsion = 10723.259504 eV Total energy + Delta-G solvation = -2232.897002 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.97420 -37.08689 -35.84753 -33.93242 -31.06608 -29.96765 -27.69646 -26.13809 -24.16385 -23.14009 -20.94953 -20.39823 -18.78266 -17.62489 -16.63619 -16.45867 -15.64646 -15.37405 -14.98521 -14.71157 -14.32842 -14.23834 -13.94068 -13.46300 -13.18260 -12.92301 -12.69433 -12.57291 -12.41589 -12.15351 -11.98904 -11.75700 -11.40426 -10.64662 -9.43811 -9.18747 -8.90045 -8.26801 -6.40792 1.40434 1.40506 1.50348 1.54781 2.08441 2.23949 2.42807 3.07604 3.64865 4.01484 4.26576 4.31087 4.37883 4.48097 4.49279 4.63303 4.71389 4.72351 4.87227 4.89280 5.07761 5.29727 5.35395 5.41649 5.62268 5.69986 6.04769 6.12066 6.24088 6.49920 6.54858 6.62016 6.77066 7.30328 8.85473 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.068166 B = 0.005354 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.662757 B = 5228.669056 C = 5315.692601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.703 5.703 3 C 0.142 3.858 4 C -0.184 4.184 5 C -0.208 4.208 6 C -0.030 4.030 7 N -0.445 5.445 8 C 0.119 3.881 9 C 0.022 3.978 10 C -0.545 4.545 11 H 0.072 0.928 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.972 3.028 15 H -0.257 1.257 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.013 4.013 19 H 0.027 0.973 20 H 0.077 0.923 21 H 0.062 0.938 22 H 0.345 0.655 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.148 0.852 26 H 0.168 0.832 27 H 0.088 0.912 28 H 0.091 0.909 29 H -0.008 1.008 30 H -0.010 1.010 31 H 0.265 0.735 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 -8.829 -5.532 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.334 5.334 3 C 0.013 3.987 4 C -0.191 4.191 5 C -0.233 4.233 6 C -0.160 4.160 7 N -0.118 5.118 8 C -0.002 4.002 9 C -0.016 4.016 10 C -0.583 4.583 11 H 0.090 0.910 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.796 3.204 15 H -0.180 1.180 16 H -0.204 1.204 17 H -0.205 1.205 18 C -0.145 4.145 19 H 0.045 0.955 20 H 0.096 0.904 21 H 0.081 0.919 22 H 0.162 0.838 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.166 0.834 26 H 0.185 0.815 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.011 0.989 30 H 0.009 0.991 31 H 0.074 0.926 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.949 -8.738 -4.606 14.019 hybrid contribution 0.633 0.832 -0.366 1.108 sum -9.315 -7.905 -4.972 13.190 Atomic orbital electron populations 1.22239 0.86902 1.02495 1.00557 1.60441 1.08302 1.14085 1.50591 1.20092 0.88667 0.89584 1.00336 1.19461 0.95093 1.12091 0.92447 1.20922 0.91777 1.11840 0.98748 1.22167 0.99957 1.10635 0.83264 1.44525 1.06512 1.54124 1.06641 1.21980 0.85245 0.99175 0.93785 1.19248 0.95434 0.91465 0.95461 1.21541 1.12780 0.93411 1.30600 0.90971 1.26017 1.00872 0.94973 0.97787 1.70127 1.42479 0.98233 1.46413 0.85297 0.78220 0.78917 0.77996 1.18030 1.20445 1.20491 1.21869 0.82822 1.10057 0.99770 0.95485 0.90435 0.91891 0.83761 0.91268 0.94253 0.83408 0.81452 0.89412 0.89063 0.98935 0.99127 0.92618 0.82483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.70 127.69 1.37 1.85 16 2 N -0.70 -16.54 6.84 -541.23 -3.70 -20.24 16 3 C 0.14 3.75 6.18 85.56 0.53 4.27 16 4 C -0.18 -5.95 5.65 -19.99 -0.11 -6.06 16 5 C -0.21 -6.60 10.81 22.14 0.24 -6.36 16 6 C -0.03 -1.03 11.43 83.21 0.95 -0.08 16 7 N -0.44 -16.99 2.75 -524.48 -1.44 -18.43 16 8 C 0.12 4.82 6.03 86.38 0.52 5.34 16 9 C 0.02 1.13 5.30 29.85 0.16 1.29 16 10 C -0.55 -29.90 9.11 25.60 0.23 -29.66 16 11 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 12 C 0.00 0.11 5.46 84.65 0.46 0.57 16 13 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 14 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 15 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 C -0.01 -0.47 11.35 83.21 0.94 0.47 16 19 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 20 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 22 H 0.34 7.62 8.81 -89.69 -0.79 6.83 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 26 H 0.17 5.13 8.06 -2.91 -0.02 5.10 16 27 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 28 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.23 16 32 H 0.16 5.36 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -63.57 278.06 2.75 -60.82 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.29 Total: 17.28 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 5.29 Total: -28.37 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -4.86 Total: -94.81 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -63.57 2.75 -60.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584918.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.102 kcal (2) G-P(sol) polarization free energy of solvation -63.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds