Wall clock time and date at job start Mon Mar 30 2020 02:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46895 * 2 1 4 4 C 1.36349 * 125.63298 * 265.25948 * 3 2 1 5 5 C 1.34847 * 108.21761 * 180.14942 * 4 3 2 6 6 C 1.40896 * 107.41771 * 359.63274 * 5 4 3 7 7 C 1.34849 * 107.41486 * 0.22942 * 6 5 4 8 8 C 1.50698 * 125.88991 * 180.02562 * 7 6 5 9 9 N 1.46907 * 109.47157 * 94.97763 * 8 7 6 10 10 C 1.46906 * 110.99826 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46677 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00287 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00107 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99671 * 0.02562 * 13 11 10 15 15 Si 1.86790 * 120.00204 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47477 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46905 * 120.00563 * 15 13 11 18 18 H 1.48507 * 109.47573 * 239.99993 * 15 13 11 19 19 H 1.09001 * 109.46765 * 60.00525 * 1 2 3 20 20 H 1.09001 * 109.46744 * 180.02562 * 1 2 3 21 21 H 1.08991 * 109.47024 * 300.00369 * 1 2 3 22 22 H 1.08998 * 109.47603 * 239.99964 * 2 1 3 23 23 H 1.08999 * 109.47500 * 119.99430 * 2 1 3 24 24 H 1.07999 * 125.89168 * 0.03422 * 4 3 2 25 25 H 1.08002 * 126.29438 * 179.90446 * 5 4 3 26 26 H 1.07997 * 126.29283 * 180.25032 * 6 5 4 27 27 H 1.09000 * 109.47251 * 214.97922 * 8 7 6 28 28 H 1.09001 * 109.47180 * 334.98102 * 8 7 6 29 29 H 1.00895 * 110.99832 * 303.95400 * 9 8 7 30 30 H 1.08999 * 109.46923 * 299.99645 * 10 9 8 31 31 H 1.08996 * 109.47053 * 59.99996 * 10 9 8 32 32 H 0.96990 * 119.99589 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3694 2.0997 -1.1044 5 6 2.7699 3.3228 -0.7019 6 6 2.6541 3.3638 0.7017 7 6 2.1920 2.1625 1.1038 8 6 1.9148 1.7541 2.5276 9 7 0.4939 1.9707 2.8314 10 6 0.1863 1.5832 4.2147 11 6 -1.2768 1.8185 4.4886 12 1 -1.9142 2.2165 3.7130 13 6 -1.8016 1.5256 5.7295 14 7 -1.0252 1.0414 6.6742 15 14 -3.6150 1.8179 6.0693 16 1 -4.2651 2.3647 4.8512 17 1 -4.2621 0.5340 6.4413 18 1 -3.7597 2.7867 7.1854 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 2.3347 1.7490 -2.1253 25 1 3.1121 4.1251 -1.3388 26 1 2.8914 4.2032 1.3384 27 1 2.1572 0.6992 2.6568 28 1 2.5261 2.3527 3.2029 29 1 0.2289 2.9286 2.6572 30 1 0.4168 0.5272 4.3559 31 1 0.7857 2.1810 4.9013 32 1 -1.3945 0.8350 7.5470 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085608565.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:39 Heat of formation + Delta-G solvation = 40.529399 kcal Electronic energy + Delta-G solvation = -13390.784449 eV Core-core repulsion = 11158.851967 eV Total energy + Delta-G solvation = -2231.932482 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.89410 -35.25440 -33.82218 -32.51073 -29.51906 -28.85296 -26.47553 -23.74516 -23.13785 -21.39767 -20.25113 -18.64999 -16.94750 -16.09680 -14.90144 -14.68408 -14.48543 -13.91352 -13.41645 -13.08427 -12.99026 -12.59335 -11.92946 -11.90255 -11.85214 -11.60312 -11.27852 -10.96191 -10.87881 -10.73769 -10.62391 -9.95906 -9.21001 -8.50487 -8.26728 -7.71595 -7.29507 -6.05056 -4.06954 2.59052 3.29116 3.29940 3.35772 3.37493 3.42838 4.42491 4.91326 5.16403 5.30921 5.31325 5.35216 5.42314 5.55116 5.81459 5.83095 5.91388 6.07431 6.10684 6.18940 6.60346 6.66915 6.66965 7.19336 7.38339 7.40435 7.61908 7.72696 7.78044 8.10094 8.37313 8.57989 9.02802 9.58210 11.06073 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.045312 B = 0.006903 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.795104 B = 4055.184623 C = 4254.170272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 N -0.433 5.433 4 C -0.026 4.026 5 C -0.204 4.204 6 C -0.208 4.208 7 C 0.041 3.959 8 C 0.122 3.878 9 N -0.684 5.684 10 C 0.193 3.807 11 C -0.512 4.512 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 H 0.052 0.948 20 H 0.065 0.935 21 H 0.096 0.904 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.154 0.846 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.333 0.667 30 H 0.027 0.973 31 H -0.012 1.012 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 -0.453 -12.655 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 N -0.109 5.109 4 C -0.156 4.156 5 C -0.229 4.229 6 C -0.233 4.233 7 C -0.072 4.072 8 C -0.008 4.008 9 N -0.315 5.315 10 C 0.067 3.933 11 C -0.551 4.551 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 H 0.071 0.929 20 H 0.084 0.916 21 H 0.115 0.885 22 H 0.096 0.904 23 H 0.103 0.897 24 H 0.171 0.829 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.150 0.850 30 H 0.045 0.955 31 H 0.005 0.995 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.583 -1.506 -12.716 13.969 hybrid contribution -0.533 0.817 0.724 1.215 sum 5.050 -0.689 -11.992 13.030 Atomic orbital electron populations 1.22234 0.93762 1.02656 1.04647 1.21722 0.96315 0.80386 1.03057 1.44093 1.49393 1.11530 1.05881 1.21653 1.09155 0.93548 0.91291 1.20747 1.09781 0.97176 0.95149 1.20646 1.10390 0.97141 0.95120 1.20479 1.05655 0.91894 0.89173 1.20344 0.91965 1.00319 0.88165 1.60725 1.13800 1.28201 1.28804 1.19577 0.96148 0.95982 0.81617 1.21208 0.94094 1.42570 0.97223 0.91912 1.24989 0.98206 0.95301 0.96090 1.69974 1.35359 1.44520 1.03921 0.86435 0.84920 0.77805 0.78208 1.19660 1.21019 1.21056 0.92922 0.91631 0.88541 0.90365 0.89651 0.82890 0.85380 0.85319 0.91502 0.94103 0.85007 0.95491 0.99453 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.11 1.38 6.56 -4.04 -0.03 1.36 16 3 N -0.43 -6.58 2.75 -112.54 -0.31 -6.89 16 4 C -0.03 -0.37 11.43 -16.75 -0.19 -0.56 16 5 C -0.20 -2.99 10.86 -39.78 -0.43 -3.42 16 6 C -0.21 -3.40 10.77 -39.78 -0.43 -3.82 16 7 C 0.04 0.69 6.40 -81.79 -0.52 0.17 16 8 C 0.12 2.25 5.85 -4.97 -0.03 2.22 16 9 N -0.68 -14.63 5.74 -116.33 -0.67 -15.30 16 10 C 0.19 5.01 5.44 -4.97 -0.03 4.98 16 11 C -0.51 -14.44 9.32 -34.44 -0.32 -14.76 16 12 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.10 1.69 7.39 -51.93 -0.38 1.31 16 22 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 23 H 0.09 1.12 7.28 -51.93 -0.38 0.74 16 24 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 25 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 26 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 27 H 0.07 1.21 7.31 -51.93 -0.38 0.83 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.33 7.12 8.71 -39.29 -0.34 6.78 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 274.78 15.07 4.14 4.14 Total: -1.00 -30.15 274.78 -7.65 -37.80 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.83 Total: 4.01 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -1.70 Total: -14.40 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.24 Total: -48.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.15 -7.65 -37.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085608565.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.329 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds