Wall clock time and date at job start Mon Mar 30 2020 02:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46895 * 2 1 4 4 C 1.36349 * 125.63298 * 265.25948 * 3 2 1 5 5 C 1.34847 * 108.21761 * 180.14942 * 4 3 2 6 6 C 1.40896 * 107.41771 * 359.63274 * 5 4 3 7 7 C 1.34849 * 107.41486 * 0.22942 * 6 5 4 8 8 C 1.50698 * 125.88991 * 180.02562 * 7 6 5 9 9 N 1.46907 * 109.47157 * 94.97763 * 8 7 6 10 10 C 1.46906 * 110.99826 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46677 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00287 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00107 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99671 * 0.02562 * 13 11 10 15 15 Si 1.86790 * 120.00204 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47477 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46905 * 120.00563 * 15 13 11 18 18 H 1.48507 * 109.47573 * 239.99993 * 15 13 11 19 19 H 1.09001 * 109.46765 * 60.00525 * 1 2 3 20 20 H 1.09001 * 109.46744 * 180.02562 * 1 2 3 21 21 H 1.08991 * 109.47024 * 300.00369 * 1 2 3 22 22 H 1.08998 * 109.47603 * 239.99964 * 2 1 3 23 23 H 1.08999 * 109.47500 * 119.99430 * 2 1 3 24 24 H 1.07999 * 125.89168 * 0.03422 * 4 3 2 25 25 H 1.08002 * 126.29438 * 179.90446 * 5 4 3 26 26 H 1.07997 * 126.29283 * 180.25032 * 6 5 4 27 27 H 1.09000 * 109.47251 * 214.97922 * 8 7 6 28 28 H 1.09001 * 109.47180 * 334.98102 * 8 7 6 29 29 H 1.00895 * 110.99832 * 303.95400 * 9 8 7 30 30 H 1.08999 * 109.46923 * 299.99645 * 10 9 8 31 31 H 1.08996 * 109.47053 * 59.99996 * 10 9 8 32 32 H 0.96990 * 119.99589 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3694 2.0997 -1.1044 5 6 2.7699 3.3228 -0.7019 6 6 2.6541 3.3638 0.7017 7 6 2.1920 2.1625 1.1038 8 6 1.9148 1.7541 2.5276 9 7 0.4939 1.9707 2.8314 10 6 0.1863 1.5832 4.2147 11 6 -1.2768 1.8185 4.4886 12 1 -1.9142 2.2165 3.7130 13 6 -1.8016 1.5256 5.7295 14 7 -1.0252 1.0414 6.6742 15 14 -3.6150 1.8179 6.0693 16 1 -4.2651 2.3647 4.8512 17 1 -4.2621 0.5340 6.4413 18 1 -3.7597 2.7867 7.1854 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 2.3347 1.7490 -2.1253 25 1 3.1121 4.1251 -1.3388 26 1 2.8914 4.2032 1.3384 27 1 2.1572 0.6992 2.6568 28 1 2.5261 2.3527 3.2029 29 1 0.2289 2.9286 2.6572 30 1 0.4168 0.5272 4.3559 31 1 0.7857 2.1810 4.9013 32 1 -1.3945 0.8350 7.5470 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085608565.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:39 Heat of formation + Delta-G solvation = 21.880892 kcal Electronic energy + Delta-G solvation = -13391.593109 eV Core-core repulsion = 11158.851967 eV Total energy + Delta-G solvation = -2232.741142 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.06593 -37.06970 -34.91428 -34.59384 -31.11284 -29.98570 -28.30205 -25.41692 -24.22356 -23.38462 -21.39919 -19.91573 -18.66347 -17.72107 -16.69703 -16.25422 -15.91816 -15.15763 -14.93758 -14.75112 -14.37738 -13.97448 -13.72473 -13.27683 -13.02755 -12.99864 -12.70022 -12.68223 -12.62698 -12.31772 -11.97614 -11.94141 -11.32469 -10.68066 -9.43226 -9.21220 -8.84686 -8.23397 -6.34535 1.37548 1.40750 1.41435 1.55183 2.16666 2.19141 2.39878 3.09915 3.69661 3.92689 3.95391 4.24651 4.31372 4.41277 4.46373 4.60582 4.72944 4.78269 4.96657 4.99268 5.07049 5.23873 5.45278 5.47729 5.49673 5.59826 5.99230 6.19429 6.35778 6.44684 6.63762 6.66930 6.86160 7.36383 8.88134 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.045312 B = 0.006903 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.795104 B = 4055.184623 C = 4254.170272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 N -0.437 5.437 4 C -0.014 4.014 5 C -0.218 4.218 6 C -0.217 4.217 7 C 0.012 3.988 8 C 0.129 3.871 9 N -0.675 5.675 10 C 0.209 3.791 11 C -0.532 4.532 12 H 0.062 0.938 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.972 3.028 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.277 1.277 19 H 0.059 0.941 20 H 0.082 0.918 21 H 0.054 0.946 22 H 0.116 0.884 23 H 0.077 0.923 24 H 0.191 0.809 25 H 0.150 0.850 26 H 0.130 0.870 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.333 0.667 30 H 0.003 0.997 31 H -0.038 1.038 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 -0.511 -14.527 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.113 5.113 4 C -0.144 4.144 5 C -0.242 4.242 6 C -0.243 4.243 7 C -0.100 4.100 8 C 0.000 4.000 9 N -0.306 5.306 10 C 0.082 3.918 11 C -0.571 4.571 12 H 0.080 0.920 13 C -0.196 4.196 14 N -0.574 5.574 15 Si 0.797 3.203 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.203 1.203 19 H 0.078 0.922 20 H 0.101 0.899 21 H 0.073 0.927 22 H 0.134 0.866 23 H 0.096 0.904 24 H 0.208 0.792 25 H 0.168 0.832 26 H 0.147 0.853 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.150 0.850 30 H 0.021 0.979 31 H -0.021 1.021 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.040 -1.565 -14.604 15.529 hybrid contribution -0.294 0.831 1.241 1.522 sum 4.746 -0.735 -13.363 14.200 Atomic orbital electron populations 1.22143 0.94496 1.03249 1.02819 1.21900 0.95622 0.79627 1.04588 1.44287 1.49115 1.12197 1.05652 1.22297 1.06819 0.92992 0.92341 1.21068 1.10285 0.98438 0.94442 1.20894 1.10007 0.96915 0.96465 1.20192 1.08096 0.92970 0.88790 1.20226 0.89843 1.00161 0.89803 1.60620 1.16223 1.28060 1.25670 1.19217 0.95111 0.93996 0.83487 1.21525 0.95070 1.42851 0.97610 0.91963 1.25926 1.03196 0.94714 0.95746 1.70093 1.37621 1.45230 1.04472 0.85294 0.78821 0.77961 0.78272 1.18831 1.20254 1.20305 0.92228 0.89915 0.92684 0.86559 0.90420 0.79173 0.83201 0.85254 0.91701 0.94470 0.84984 0.97866 1.02081 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.44 10.24 71.98 0.74 -3.70 16 2 C 0.10 2.47 6.56 86.38 0.57 3.03 16 3 N -0.44 -12.45 2.75 -509.96 -1.40 -13.85 16 4 C -0.01 -0.35 11.43 83.21 0.95 0.60 16 5 C -0.22 -5.88 10.86 22.14 0.24 -5.64 16 6 C -0.22 -6.92 10.77 22.14 0.24 -6.69 16 7 C 0.01 0.41 6.40 41.08 0.26 0.67 16 8 C 0.13 4.89 5.85 85.56 0.50 5.39 16 9 N -0.68 -29.77 5.74 -521.96 -3.00 -32.76 16 10 C 0.21 11.29 5.44 85.56 0.47 11.76 16 11 C -0.53 -30.55 9.32 25.60 0.24 -30.31 16 12 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 13 C 0.00 0.14 5.46 84.65 0.46 0.60 16 14 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 15 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.05 1.92 7.39 -2.39 -0.02 1.91 16 22 H 0.12 1.91 8.13 -2.39 -0.02 1.89 16 23 H 0.08 1.97 7.28 -2.39 -0.02 1.95 16 24 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 25 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 26 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 27 H 0.06 2.44 7.31 -2.39 -0.02 2.42 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.33 14.63 8.71 -89.70 -0.78 13.85 16 30 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 31 H -0.04 -2.23 8.14 -2.39 -0.02 -2.25 16 32 H 0.27 15.00 8.31 -92.72 -0.77 14.23 16 Total: -1.00 -65.03 274.78 2.88 -62.15 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.31 Total: 18.48 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.66 Total: -24.28 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -4.11 Total: -102.83 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.03 2.88 -62.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085608565.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.029 kcal (2) G-P(sol) polarization free energy of solvation -65.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds