Wall clock time and date at job start Mon Mar 30 2020 02:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.47482 * 2 1 4 4 C 1.46891 * 111.00500 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47051 * 34.99913 * 4 3 2 6 6 C 1.53001 * 109.47511 * 275.00078 * 4 3 2 7 7 C 1.50694 * 109.47469 * 154.99780 * 4 3 2 8 8 C 1.34810 * 125.90533 * 1.23954 * 7 4 3 9 9 C 1.41175 * 107.50479 * 180.26223 * 8 7 4 10 10 C 1.34802 * 107.51028 * 359.56527 * 9 8 7 11 11 N 1.36847 * 125.90922 * 181.23831 * 7 4 3 12 12 C 1.37492 * 125.69353 * 0.02562 * 11 7 4 13 13 H 1.08000 * 120.00162 * 336.58089 * 12 11 7 14 14 C 1.38922 * 119.99976 * 156.58347 * 12 11 7 15 15 N 1.31359 * 119.99956 * 164.19844 * 14 12 11 16 16 Si 1.86800 * 120.00222 * 344.20385 * 14 12 11 17 17 H 1.48497 * 109.47146 * 85.78407 * 16 14 12 18 18 H 1.48497 * 109.47025 * 205.78398 * 16 14 12 19 19 H 1.48502 * 109.46796 * 325.78240 * 16 14 12 20 20 H 1.09001 * 109.47041 * 59.99831 * 1 2 3 21 21 H 1.09002 * 109.47167 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47082 * 300.00544 * 1 2 3 23 23 H 1.08994 * 109.47086 * 239.99572 * 2 1 3 24 24 H 1.09002 * 109.46833 * 119.99664 * 2 1 3 25 25 H 1.00901 * 110.99808 * 56.03914 * 3 2 1 26 26 H 1.09003 * 109.46928 * 306.01319 * 6 4 3 27 27 H 1.09001 * 109.46823 * 66.00503 * 6 4 3 28 28 H 1.08997 * 109.47325 * 186.01054 * 6 4 3 29 29 H 1.07998 * 126.24505 * 359.97438 * 8 7 4 30 30 H 1.07998 * 126.23998 * 179.72947 * 9 8 7 31 31 H 1.08001 * 125.90981 * 180.13520 * 10 9 8 32 32 H 0.97000 * 120.00191 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8741 0.5922 -0.5886 6 6 4.0008 1.3123 1.4378 7 6 3.9562 2.7247 -0.5999 8 6 3.1639 3.7191 -1.0478 9 6 4.0035 4.7452 -1.5329 10 6 5.2782 4.3443 -1.3549 11 7 5.2591 3.1004 -0.7847 12 6 6.3643 2.3527 -0.4535 13 1 6.2914 1.5883 0.3060 14 6 7.5750 2.5805 -1.0956 15 7 8.6884 2.1053 -0.5859 16 14 7.6195 3.5628 -2.6838 17 1 7.6963 5.0118 -2.3677 18 1 8.8097 3.1658 -3.4782 19 1 6.3880 3.2918 -3.4682 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6442 1.9013 0.7813 26 1 3.5313 2.0809 2.0519 27 1 3.7540 0.3281 1.8360 28 1 5.0822 1.4483 1.4495 29 1 2.0840 3.7272 -1.0414 30 1 3.6830 5.6816 -1.9651 31 1 6.1617 4.9056 -1.6210 32 1 9.5337 2.2640 -1.0344 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085836303.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:57 Heat of formation + Delta-G solvation = 46.872524 kcal Electronic energy + Delta-G solvation = -13826.623510 eV Core-core repulsion = 11594.966086 eV Total energy + Delta-G solvation = -2231.657423 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.01971 -36.60811 -33.35470 -32.01347 -30.53613 -27.69746 -26.97614 -24.47078 -22.40499 -21.59174 -19.91582 -18.40440 -17.19515 -15.88022 -15.32710 -14.55465 -14.24697 -13.66659 -13.49049 -13.24434 -12.62129 -12.42332 -12.02965 -11.86410 -11.62098 -11.42548 -11.37169 -11.04388 -10.95818 -10.58139 -10.39467 -10.10885 -9.78481 -9.18621 -7.99211 -7.69855 -6.76223 -6.67729 -4.33681 3.01484 3.17265 3.28299 3.59222 3.99136 4.25693 4.32827 4.89824 5.08841 5.25461 5.41032 5.58438 5.69584 5.87372 5.89888 5.92044 6.14572 6.24602 6.37081 6.38680 6.50676 6.64857 6.72518 6.99802 7.30132 7.35958 7.63801 7.71603 7.81029 8.01295 8.40783 8.45427 9.07666 9.43458 10.32088 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.040553 B = 0.009990 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.288965 B = 2802.255836 C = 3181.593965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 N -0.675 5.675 4 C 0.174 3.826 5 H 0.075 0.925 6 C -0.183 4.183 7 C -0.025 4.025 8 C -0.201 4.201 9 C -0.237 4.237 10 C -0.090 4.090 11 N -0.258 5.258 12 C -0.353 4.353 13 H 0.123 0.877 14 C 0.069 3.931 15 N -0.846 5.846 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.292 1.292 19 H -0.251 1.251 20 H 0.062 0.938 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.025 0.975 25 H 0.339 0.661 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 -2.208 1.002 9.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 N -0.306 5.306 4 C 0.064 3.936 5 H 0.093 0.907 6 C -0.242 4.242 7 C -0.142 4.142 8 C -0.226 4.226 9 C -0.262 4.262 10 C -0.225 4.225 11 N 0.083 4.917 12 C -0.480 4.480 13 H 0.141 0.859 14 C -0.141 4.141 15 N -0.477 5.477 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.219 1.219 19 H -0.175 1.175 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.043 0.957 25 H 0.157 0.843 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.159 0.841 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.774 -2.427 0.416 9.113 hybrid contribution 0.575 0.241 0.191 0.652 sum -8.199 -2.186 0.606 8.507 Atomic orbital electron populations 1.21755 0.95395 1.01150 1.02257 1.21906 0.95152 0.90165 1.00249 1.60302 1.07853 1.12496 1.49987 1.19423 0.85837 0.94342 0.93985 0.90707 1.22594 1.04283 0.99999 0.97346 1.19690 0.83501 0.97959 1.13091 1.20140 0.97405 0.95222 1.09797 1.20392 0.92544 1.00683 1.12548 1.21573 0.98466 0.89529 1.12976 1.40339 1.04431 1.10345 1.36622 1.19646 0.85922 1.19404 1.23060 0.85925 1.25339 0.94439 0.95830 0.98523 1.69675 0.98385 1.41735 1.37872 0.86537 0.78327 0.79263 0.82709 1.19797 1.21920 1.17517 0.91846 0.92655 0.93071 0.91219 0.95718 0.84333 0.92916 0.93755 0.90204 0.86236 0.87054 0.84074 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.17 37.16 0.38 -1.25 16 2 C 0.05 0.74 6.20 -3.82 -0.02 0.71 16 3 N -0.68 -10.95 5.42 -107.96 -0.59 -11.54 16 4 C 0.17 3.40 2.77 -68.87 -0.19 3.21 16 5 H 0.07 1.54 7.80 -51.93 -0.41 1.13 16 6 C -0.18 -3.34 9.09 37.16 0.34 -3.00 16 7 C -0.02 -0.58 6.15 -81.57 -0.50 -1.09 16 8 C -0.20 -4.57 10.14 -39.68 -0.40 -4.97 16 9 C -0.24 -5.54 10.86 -39.69 -0.43 -5.97 16 10 C -0.09 -2.29 8.59 -16.53 -0.14 -2.43 16 11 N -0.26 -6.68 2.74 -57.81 -0.16 -6.84 16 12 C -0.35 -9.61 9.80 -14.76 -0.14 -9.75 16 13 H 0.12 3.38 5.62 -52.49 -0.30 3.08 16 14 C 0.07 1.88 5.47 -17.50 -0.10 1.78 16 15 N -0.85 -23.33 13.95 55.49 0.77 -22.56 16 16 Si 0.90 21.63 24.74 -169.99 -4.21 17.42 16 17 H -0.27 -6.26 6.31 56.52 0.36 -5.90 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.25 -6.25 6.97 56.52 0.39 -5.85 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 24 H 0.02 0.32 7.56 -51.93 -0.39 -0.07 16 25 H 0.34 5.10 8.40 -39.29 -0.33 4.77 16 26 H 0.05 0.91 8.02 -51.93 -0.42 0.50 16 27 H 0.04 0.70 7.61 -51.93 -0.40 0.30 16 28 H 0.08 1.67 5.26 -51.93 -0.27 1.40 16 29 H 0.12 2.47 7.77 -52.49 -0.41 2.06 16 30 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 31 H 0.14 3.50 4.25 -52.49 -0.22 3.27 16 32 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 257.61 15.07 3.88 3.88 Total: -1.00 -28.29 257.61 -5.94 -34.23 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.44 Total: 8.14 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -1.22 Total: -22.74 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.03 Total: -40.94 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.21 Total: 17.42 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.29 -5.94 -34.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085836303.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.107 kcal (2) G-P(sol) polarization free energy of solvation -28.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds