Wall clock time and date at job start Mon Mar 30 2020 02:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.47482 * 2 1 4 4 C 1.46891 * 111.00500 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47051 * 34.99913 * 4 3 2 6 6 C 1.53001 * 109.47511 * 275.00078 * 4 3 2 7 7 C 1.50694 * 109.47469 * 154.99780 * 4 3 2 8 8 C 1.34810 * 125.90533 * 1.23954 * 7 4 3 9 9 C 1.41175 * 107.50479 * 180.26223 * 8 7 4 10 10 C 1.34802 * 107.51028 * 359.56527 * 9 8 7 11 11 N 1.36847 * 125.90922 * 181.23831 * 7 4 3 12 12 C 1.37492 * 125.69353 * 0.02562 * 11 7 4 13 13 H 1.08000 * 120.00162 * 336.58089 * 12 11 7 14 14 C 1.38922 * 119.99976 * 156.58347 * 12 11 7 15 15 N 1.31359 * 119.99956 * 164.19844 * 14 12 11 16 16 Si 1.86800 * 120.00222 * 344.20385 * 14 12 11 17 17 H 1.48497 * 109.47146 * 85.78407 * 16 14 12 18 18 H 1.48497 * 109.47025 * 205.78398 * 16 14 12 19 19 H 1.48502 * 109.46796 * 325.78240 * 16 14 12 20 20 H 1.09001 * 109.47041 * 59.99831 * 1 2 3 21 21 H 1.09002 * 109.47167 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47082 * 300.00544 * 1 2 3 23 23 H 1.08994 * 109.47086 * 239.99572 * 2 1 3 24 24 H 1.09002 * 109.46833 * 119.99664 * 2 1 3 25 25 H 1.00901 * 110.99808 * 56.03914 * 3 2 1 26 26 H 1.09003 * 109.46928 * 306.01319 * 6 4 3 27 27 H 1.09001 * 109.46823 * 66.00503 * 6 4 3 28 28 H 1.08997 * 109.47325 * 186.01054 * 6 4 3 29 29 H 1.07998 * 126.24505 * 359.97438 * 8 7 4 30 30 H 1.07998 * 126.23998 * 179.72947 * 9 8 7 31 31 H 1.08001 * 125.90981 * 180.13520 * 10 9 8 32 32 H 0.97000 * 120.00191 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8741 0.5922 -0.5886 6 6 4.0008 1.3123 1.4378 7 6 3.9562 2.7247 -0.5999 8 6 3.1639 3.7191 -1.0478 9 6 4.0035 4.7452 -1.5329 10 6 5.2782 4.3443 -1.3549 11 7 5.2591 3.1004 -0.7847 12 6 6.3643 2.3527 -0.4535 13 1 6.2914 1.5883 0.3060 14 6 7.5750 2.5805 -1.0956 15 7 8.6884 2.1053 -0.5859 16 14 7.6195 3.5628 -2.6838 17 1 7.6963 5.0118 -2.3677 18 1 8.8097 3.1658 -3.4782 19 1 6.3880 3.2918 -3.4682 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6442 1.9013 0.7813 26 1 3.5313 2.0809 2.0519 27 1 3.7540 0.3281 1.8360 28 1 5.0822 1.4483 1.4495 29 1 2.0840 3.7272 -1.0414 30 1 3.6830 5.6816 -1.9651 31 1 6.1617 4.9056 -1.6210 32 1 9.5337 2.2640 -1.0344 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085836303.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:57 Heat of formation + Delta-G solvation = 29.063624 kcal Electronic energy + Delta-G solvation = -13827.395761 eV Core-core repulsion = 11594.966086 eV Total energy + Delta-G solvation = -2232.429675 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.87044 -37.96453 -35.36140 -33.29765 -32.45952 -29.07656 -28.59778 -26.47002 -23.81492 -22.87157 -21.79237 -20.25904 -19.03379 -17.79511 -16.67976 -15.94720 -15.84564 -15.46122 -15.21484 -14.76874 -14.13781 -14.05154 -13.72272 -13.54278 -13.27313 -12.87010 -12.64583 -12.49690 -12.40663 -12.22298 -11.96199 -11.79316 -11.66916 -11.14968 -9.62252 -9.28683 -8.80019 -8.54056 -6.40658 1.10911 1.23967 1.37161 1.68289 2.04125 2.43367 2.72975 2.92244 3.51782 4.04720 4.24345 4.28764 4.37118 4.44218 4.52227 4.68818 4.80574 4.84964 4.90831 5.04697 5.16357 5.18191 5.21446 5.40427 5.44787 5.74289 5.77785 5.89952 6.19235 6.43816 6.57799 6.64961 7.12849 7.47914 8.31989 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.040553 B = 0.009990 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.288965 B = 2802.255836 C = 3181.593965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 N -0.676 5.676 4 C 0.178 3.822 5 H 0.059 0.941 6 C -0.173 4.173 7 C -0.032 4.032 8 C -0.202 4.202 9 C -0.234 4.234 10 C -0.118 4.118 11 N -0.280 5.280 12 C -0.366 4.366 13 H 0.107 0.893 14 C 0.031 3.969 15 N -0.879 5.879 16 Si 0.955 3.045 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.267 1.267 20 H 0.057 0.943 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.033 0.967 25 H 0.347 0.653 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.096 -1.892 0.762 11.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 N -0.308 5.308 4 C 0.067 3.933 5 H 0.077 0.923 6 C -0.231 4.231 7 C -0.149 4.149 8 C -0.226 4.226 9 C -0.259 4.259 10 C -0.251 4.251 11 N 0.059 4.941 12 C -0.493 4.493 13 H 0.125 0.875 14 C -0.177 4.177 15 N -0.512 5.512 16 Si 0.781 3.219 17 H -0.184 1.184 18 H -0.206 1.206 19 H -0.191 1.191 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.166 0.834 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.592 -2.108 0.186 10.802 hybrid contribution 1.006 0.126 0.308 1.059 sum -9.587 -1.982 0.493 9.802 Atomic orbital electron populations 1.21699 0.93119 1.02505 1.02446 1.22007 0.96933 0.88488 1.00234 1.60255 1.05460 1.14478 1.50562 1.19333 0.87996 0.91916 0.94027 0.92296 1.22460 1.01962 1.01783 0.96942 1.20475 0.82819 0.99505 1.12099 1.20470 0.98489 0.94649 1.09027 1.20830 0.91862 1.01762 1.11464 1.21874 0.99493 0.89860 1.13887 1.40458 1.04853 1.10788 1.38023 1.19639 0.86929 1.19605 1.23146 0.87535 1.25939 0.94121 0.96875 1.00719 1.69720 0.98958 1.43367 1.39150 0.85732 0.77818 0.78891 0.79437 1.18432 1.20641 1.19124 0.92420 0.90763 0.92079 0.92120 0.94873 0.83358 0.92068 0.91225 0.93498 0.83908 0.84215 0.84094 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 10.17 71.98 0.73 -1.92 16 2 C 0.05 1.29 6.20 86.30 0.54 1.83 16 3 N -0.68 -20.47 5.42 -495.47 -2.69 -23.16 16 4 C 0.18 6.81 2.77 44.17 0.12 6.93 16 5 H 0.06 2.43 7.80 -2.38 -0.02 2.41 16 6 C -0.17 -6.16 9.09 71.98 0.65 -5.51 16 7 C -0.03 -1.47 6.15 40.99 0.25 -1.21 16 8 C -0.20 -8.75 10.14 22.20 0.23 -8.53 16 9 C -0.23 -10.44 10.86 22.20 0.24 -10.20 16 10 C -0.12 -5.84 8.59 83.12 0.71 -5.13 16 11 N -0.28 -14.55 2.74 -336.81 -0.92 -15.47 16 12 C -0.37 -20.37 9.80 83.97 0.82 -19.55 16 13 H 0.11 6.13 5.62 -2.91 -0.02 6.11 16 14 C 0.03 1.69 5.47 84.93 0.46 2.16 16 15 N -0.88 -49.36 13.95 21.65 0.30 -49.06 16 16 Si 0.96 44.66 24.74 68.60 1.70 46.36 16 17 H -0.26 -11.41 6.31 99.48 0.63 -10.78 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.27 -13.00 6.97 99.48 0.69 -12.31 16 20 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.06 1.61 8.06 -2.39 -0.02 1.59 16 24 H 0.03 0.77 7.56 -2.39 -0.02 0.76 16 25 H 0.35 9.50 8.40 -89.69 -0.75 8.75 16 26 H 0.06 2.04 8.02 -2.39 -0.02 2.02 16 27 H 0.07 2.09 7.61 -2.39 -0.02 2.07 16 28 H 0.05 2.00 5.26 -2.39 -0.01 1.98 16 29 H 0.14 5.45 7.77 -2.91 -0.02 5.42 16 30 H 0.14 5.32 8.06 -2.91 -0.02 5.30 16 31 H 0.14 6.85 4.25 -2.91 -0.01 6.84 16 32 H 0.29 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -59.92 257.61 3.42 -56.50 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.27 Total: 25.96 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 4.76 Total: -41.13 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -3.31 Total: -87.69 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.70 Total: 46.36 kcal Total: -59.92 3.42 -56.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085836303.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.568 kcal (2) G-P(sol) polarization free energy of solvation -59.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds