Wall clock time and date at job start Mon Mar 30 2020 02:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47423 * 2 1 4 4 C 1.46897 * 111.00127 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46755 * 324.99278 * 4 3 2 6 6 C 1.53001 * 109.47300 * 84.99682 * 4 3 2 7 7 C 1.50697 * 109.47171 * 204.99789 * 4 3 2 8 8 C 1.41179 * 126.24458 * 319.97261 * 7 4 3 9 9 C 1.34812 * 107.50715 * 180.02562 * 8 7 4 10 10 N 1.36849 * 108.18275 * 359.97438 * 9 8 7 11 11 C 1.37501 * 125.68833 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00299 * 340.75556 * 11 10 9 13 13 C 1.38923 * 119.99461 * 160.75239 * 11 10 9 14 14 N 1.31350 * 120.00457 * 349.77835 * 13 11 10 15 15 Si 1.86806 * 119.99641 * 169.77269 * 13 11 10 16 16 H 1.48501 * 109.46811 * 60.00427 * 15 13 11 17 17 H 1.48495 * 109.46978 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47040 * 300.00303 * 15 13 11 19 19 C 1.34811 * 126.24949 * 140.24152 * 7 4 3 20 20 H 1.08998 * 109.46882 * 59.99771 * 1 2 3 21 21 H 1.08992 * 109.47473 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46800 * 300.00946 * 1 2 3 23 23 H 1.08995 * 109.47202 * 239.99526 * 2 1 3 24 24 H 1.09010 * 109.46911 * 119.99794 * 2 1 3 25 25 H 1.00900 * 110.99759 * 303.95187 * 3 2 1 26 26 H 1.08997 * 109.46979 * 299.99655 * 6 4 3 27 27 H 1.08995 * 109.47107 * 59.99965 * 6 4 3 28 28 H 1.09001 * 109.47053 * 180.02562 * 6 4 3 29 29 H 1.07995 * 126.24801 * 359.96672 * 8 7 4 30 30 H 1.07998 * 125.90735 * 180.02562 * 9 8 7 31 31 H 0.97001 * 120.00239 * 179.97438 * 14 13 11 32 32 H 1.07996 * 125.90503 * 359.97438 * 19 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8740 0.5922 0.5887 6 6 4.0008 1.3121 -1.4378 7 6 3.9563 2.7246 0.5998 8 6 3.3784 3.9958 0.3919 9 6 4.0937 4.8881 1.1056 10 7 5.0956 4.2147 1.7501 11 6 6.0384 4.7786 2.5770 12 1 6.2332 5.8398 2.5293 13 6 6.7403 3.9831 3.4740 14 7 6.3704 2.7394 3.6778 15 14 8.2103 4.6825 4.3903 16 1 7.7777 5.8462 5.2051 17 1 8.7809 3.6394 5.2800 18 1 9.2410 5.1175 3.4138 19 6 5.0064 2.8873 1.4294 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5139 0.8901 25 1 1.6443 1.9012 -0.7814 26 1 3.6623 0.3714 -1.8720 27 1 3.6150 2.1440 -2.0270 28 1 5.0905 1.3407 -1.4382 29 1 2.5205 4.2137 -0.2268 30 1 3.9076 5.9506 1.1601 31 1 6.8608 2.1839 4.3038 32 1 5.6621 2.1050 1.7820 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085838102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:59 Heat of formation + Delta-G solvation = 37.334156 kcal Electronic energy + Delta-G solvation = -13498.147951 eV Core-core repulsion = 11266.076913 eV Total energy + Delta-G solvation = -2232.071038 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.48904 -36.55993 -33.39409 -31.92121 -29.35513 -27.59897 -26.78362 -24.73431 -22.20846 -21.39672 -19.18695 -17.93013 -17.49603 -15.39224 -15.03129 -14.51021 -14.37268 -13.65614 -12.86253 -12.71799 -12.46424 -12.26874 -11.98043 -11.73705 -11.45334 -11.24452 -11.20199 -11.00144 -10.84499 -10.76116 -10.47082 -10.09250 -9.90635 -9.10900 -7.77063 -7.32729 -6.63904 -6.31492 -4.22221 3.02978 3.09651 3.12361 3.90596 4.03736 4.35972 4.88742 5.11282 5.34119 5.41634 5.53199 5.71670 5.81741 5.96018 5.99549 6.06853 6.26552 6.33647 6.44789 6.62940 6.69918 6.89939 7.05840 7.18966 7.30329 7.66337 7.80929 7.87930 8.01731 8.19868 8.68222 8.76970 9.35412 9.79013 10.44639 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.050086 B = 0.007421 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.908009 B = 3772.419021 C = 3932.835140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 N -0.675 5.675 4 C 0.173 3.827 5 H 0.065 0.935 6 C -0.169 4.169 7 C -0.218 4.218 8 C -0.207 4.207 9 C -0.090 4.090 10 N -0.258 5.258 11 C -0.348 4.348 12 H 0.102 0.898 13 C 0.044 3.956 14 N -0.846 5.846 15 Si 0.936 3.064 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.269 1.269 19 C 0.009 3.991 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.019 0.981 24 H 0.067 0.933 25 H 0.333 0.667 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.276 0.724 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 -3.716 -5.318 7.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 N -0.305 5.305 4 C 0.063 3.937 5 H 0.084 0.916 6 C -0.229 4.229 7 C -0.224 4.224 8 C -0.233 4.233 9 C -0.224 4.224 10 N 0.084 4.916 11 C -0.476 4.476 12 H 0.119 0.881 13 C -0.165 4.165 14 N -0.478 5.478 15 Si 0.760 3.240 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.194 1.194 19 C -0.131 4.131 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.038 0.962 24 H 0.086 0.914 25 H 0.151 0.849 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.147 0.853 31 H 0.087 0.913 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.698 -3.666 -4.239 6.715 hybrid contribution 0.808 0.062 -0.374 0.893 sum -2.890 -3.604 -4.613 6.528 Atomic orbital electron populations 1.21757 0.95730 1.00900 1.02184 1.21925 0.95015 0.90956 0.99803 1.60588 1.08794 1.11596 1.49565 1.19518 0.85301 0.95780 0.93063 0.91631 1.22456 1.02130 0.99677 0.98591 1.18711 1.01865 0.93008 1.08821 1.19986 1.02641 0.92714 1.07948 1.21358 0.96176 0.97013 1.07882 1.40167 1.17808 1.06009 1.27617 1.19838 1.15809 0.95256 1.16668 0.88067 1.25477 0.99028 0.95618 0.96346 1.69931 1.37586 1.07298 1.32938 0.85867 0.80322 0.78724 0.79041 1.19416 1.20373 1.19368 1.21638 1.02048 0.87110 1.02267 0.93228 0.92883 0.91878 0.96238 0.91407 0.84933 0.94432 0.92859 0.92274 0.87907 0.85293 0.91343 0.82609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.17 37.16 0.38 -1.43 16 2 C 0.05 0.77 6.20 -3.82 -0.02 0.74 16 3 N -0.68 -11.87 6.01 -107.95 -0.65 -12.52 16 4 C 0.17 3.40 3.03 -68.87 -0.21 3.19 16 5 H 0.07 1.33 7.80 -51.93 -0.40 0.92 16 6 C -0.17 -2.86 9.14 37.16 0.34 -2.52 16 7 C -0.22 -5.22 5.13 -104.72 -0.54 -5.76 16 8 C -0.21 -4.95 10.53 -39.68 -0.42 -5.37 16 9 C -0.09 -2.29 11.37 -16.53 -0.19 -2.48 16 10 N -0.26 -7.15 2.90 -62.00 -0.18 -7.33 16 11 C -0.35 -9.54 10.08 -14.75 -0.15 -9.69 16 12 H 0.10 2.61 7.85 -52.49 -0.41 2.20 16 13 C 0.04 1.15 5.37 -17.50 -0.09 1.06 16 14 N -0.85 -23.08 10.83 55.49 0.60 -22.48 16 15 Si 0.94 19.72 29.56 -169.99 -5.03 14.70 16 16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 19 C 0.01 0.23 9.96 -16.53 -0.16 0.07 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.02 0.27 7.43 -51.93 -0.39 -0.12 16 24 H 0.07 1.03 8.06 -51.92 -0.42 0.62 16 25 H 0.33 5.44 8.47 -39.29 -0.33 5.11 16 26 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 27 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 30 H 0.13 2.95 8.06 -52.49 -0.42 2.53 16 31 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.16 4.35 6.35 -52.49 -0.33 4.01 16 LS Contribution 270.13 15.07 4.07 4.07 Total: -1.00 -28.85 270.13 -7.01 -35.86 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -4.77 Total: 9.89 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -1.06 Total: -22.19 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.23 Total: -42.34 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.85 -7.01 -35.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085838102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.197 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds