Wall clock time and date at job start Mon Mar 30 2020 02:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47423 * 2 1 4 4 C 1.46897 * 111.00127 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46755 * 324.99278 * 4 3 2 6 6 C 1.53001 * 109.47300 * 84.99682 * 4 3 2 7 7 C 1.50697 * 109.47171 * 204.99789 * 4 3 2 8 8 C 1.41179 * 126.24458 * 319.97261 * 7 4 3 9 9 C 1.34812 * 107.50715 * 180.02562 * 8 7 4 10 10 N 1.36849 * 108.18275 * 359.97438 * 9 8 7 11 11 C 1.37501 * 125.68833 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00299 * 340.75556 * 11 10 9 13 13 C 1.38923 * 119.99461 * 160.75239 * 11 10 9 14 14 N 1.31350 * 120.00457 * 349.77835 * 13 11 10 15 15 Si 1.86806 * 119.99641 * 169.77269 * 13 11 10 16 16 H 1.48501 * 109.46811 * 60.00427 * 15 13 11 17 17 H 1.48495 * 109.46978 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47040 * 300.00303 * 15 13 11 19 19 C 1.34811 * 126.24949 * 140.24152 * 7 4 3 20 20 H 1.08998 * 109.46882 * 59.99771 * 1 2 3 21 21 H 1.08992 * 109.47473 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46800 * 300.00946 * 1 2 3 23 23 H 1.08995 * 109.47202 * 239.99526 * 2 1 3 24 24 H 1.09010 * 109.46911 * 119.99794 * 2 1 3 25 25 H 1.00900 * 110.99759 * 303.95187 * 3 2 1 26 26 H 1.08997 * 109.46979 * 299.99655 * 6 4 3 27 27 H 1.08995 * 109.47107 * 59.99965 * 6 4 3 28 28 H 1.09001 * 109.47053 * 180.02562 * 6 4 3 29 29 H 1.07995 * 126.24801 * 359.96672 * 8 7 4 30 30 H 1.07998 * 125.90735 * 180.02562 * 9 8 7 31 31 H 0.97001 * 120.00239 * 179.97438 * 14 13 11 32 32 H 1.07996 * 125.90503 * 359.97438 * 19 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8740 0.5922 0.5887 6 6 4.0008 1.3121 -1.4378 7 6 3.9563 2.7246 0.5998 8 6 3.3784 3.9958 0.3919 9 6 4.0937 4.8881 1.1056 10 7 5.0956 4.2147 1.7501 11 6 6.0384 4.7786 2.5770 12 1 6.2332 5.8398 2.5293 13 6 6.7403 3.9831 3.4740 14 7 6.3704 2.7394 3.6778 15 14 8.2103 4.6825 4.3903 16 1 7.7777 5.8462 5.2051 17 1 8.7809 3.6394 5.2800 18 1 9.2410 5.1175 3.4138 19 6 5.0064 2.8873 1.4294 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5139 0.8901 25 1 1.6443 1.9012 -0.7814 26 1 3.6623 0.3714 -1.8720 27 1 3.6150 2.1440 -2.0270 28 1 5.0905 1.3407 -1.4382 29 1 2.5205 4.2137 -0.2268 30 1 3.9076 5.9506 1.1601 31 1 6.8608 2.1839 4.3038 32 1 5.6621 2.1050 1.7820 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085838102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:59 Heat of formation + Delta-G solvation = 20.145297 kcal Electronic energy + Delta-G solvation = -13498.893316 eV Core-core repulsion = 11266.076913 eV Total energy + Delta-G solvation = -2232.816403 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.43183 -37.99405 -35.30693 -33.38320 -31.19150 -29.13995 -28.42900 -26.69107 -23.65308 -22.78941 -21.11683 -19.76855 -19.50948 -17.25347 -16.44907 -16.14677 -15.70676 -15.17524 -14.73822 -14.28143 -14.09688 -13.87250 -13.63211 -13.14017 -13.05299 -12.94019 -12.62968 -12.57449 -12.49278 -12.12734 -11.98443 -11.81824 -11.56599 -11.03799 -9.33498 -9.08764 -8.62137 -8.30123 -6.29505 1.33736 1.37582 1.50562 2.02921 2.18643 2.53715 3.08771 3.38056 3.61518 4.21017 4.35721 4.40924 4.52971 4.61276 4.70636 4.79861 4.91046 5.00170 5.07793 5.15807 5.17840 5.23971 5.31118 5.39173 5.43153 5.78190 5.91943 6.08399 6.43909 6.65822 6.72897 6.86911 7.35813 7.77145 8.47939 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.050086 B = 0.007421 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.908009 B = 3772.419021 C = 3932.835140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 N -0.688 5.688 4 C 0.175 3.825 5 H 0.052 0.948 6 C -0.158 4.158 7 C -0.208 4.208 8 C -0.207 4.207 9 C -0.110 4.110 10 N -0.279 5.279 11 C -0.386 4.386 12 H 0.108 0.892 13 C -0.002 4.002 14 N -0.879 5.879 15 Si 1.014 2.986 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.261 1.261 19 C -0.031 4.031 20 H 0.060 0.940 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.342 0.658 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.281 0.719 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.418 -3.806 -6.000 8.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 N -0.320 5.320 4 C 0.064 3.936 5 H 0.071 0.929 6 C -0.217 4.217 7 C -0.215 4.215 8 C -0.232 4.232 9 C -0.244 4.244 10 N 0.062 4.938 11 C -0.513 4.513 12 H 0.126 0.874 13 C -0.207 4.207 14 N -0.512 5.512 15 Si 0.834 3.166 16 H -0.184 1.184 17 H -0.196 1.196 18 H -0.185 1.185 19 C -0.169 4.169 20 H 0.080 0.920 21 H 0.093 0.907 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.161 0.839 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.148 0.852 30 H 0.165 0.835 31 H 0.091 0.909 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.169 -3.764 -4.939 7.480 hybrid contribution 0.865 0.054 -0.193 0.887 sum -3.305 -3.710 -5.133 7.143 Atomic orbital electron populations 1.21709 0.93735 1.02343 1.02107 1.21987 0.96598 0.89178 0.99965 1.60454 1.07288 1.13817 1.50406 1.19439 0.86914 0.92922 0.94283 0.92942 1.22307 1.01336 1.01423 0.96658 1.19229 1.00195 0.95079 1.06957 1.20301 1.03004 0.92224 1.07695 1.21902 0.96167 0.98310 1.08058 1.40444 1.18601 1.06390 1.28320 1.20324 1.17082 0.96098 1.17789 0.87394 1.26589 1.01571 0.95764 0.96751 1.70059 1.38873 1.08693 1.33526 0.84714 0.76082 0.78193 0.77641 1.18356 1.19647 1.18510 1.21682 1.03712 0.87039 1.04482 0.92046 0.90713 0.93181 0.94561 0.92693 0.83936 0.91613 0.92326 0.93382 0.85247 0.83503 0.90937 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 10.17 71.98 0.73 -2.36 16 2 C 0.05 1.40 6.20 86.30 0.54 1.94 16 3 N -0.69 -23.05 6.01 -495.46 -2.98 -26.03 16 4 C 0.17 6.73 3.03 44.17 0.13 6.87 16 5 H 0.05 2.14 7.80 -2.39 -0.02 2.12 16 6 C -0.16 -5.05 9.14 71.98 0.66 -4.40 16 7 C -0.21 -10.02 5.13 -19.93 -0.10 -10.12 16 8 C -0.21 -9.74 10.53 22.21 0.23 -9.50 16 9 C -0.11 -5.63 11.37 83.12 0.94 -4.69 16 10 N -0.28 -15.82 2.90 -350.07 -1.02 -16.84 16 11 C -0.39 -21.62 10.08 83.97 0.85 -20.77 16 12 H 0.11 5.65 7.85 -2.91 -0.02 5.63 16 13 C 0.00 -0.09 5.37 84.93 0.46 0.37 16 14 N -0.88 -49.28 10.83 21.65 0.23 -49.04 16 15 Si 1.01 40.42 29.56 68.60 2.03 42.45 16 16 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 19 C -0.03 -1.73 9.96 83.12 0.83 -0.91 16 20 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.04 0.87 7.43 -2.39 -0.02 0.86 16 24 H 0.05 1.62 8.06 -2.38 -0.02 1.60 16 25 H 0.34 10.31 8.47 -89.69 -0.76 9.55 16 26 H 0.06 1.73 7.45 -2.39 -0.02 1.71 16 27 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.13 5.29 8.06 -2.91 -0.02 5.27 16 30 H 0.15 6.70 8.06 -2.91 -0.02 6.68 16 31 H 0.28 14.48 8.31 -92.71 -0.77 13.70 16 32 H 0.14 7.99 6.35 -2.91 -0.02 7.98 16 Total: -1.00 -62.88 270.13 3.87 -59.01 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.33 Total: 34.02 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 5.27 Total: -43.57 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -3.76 Total: -91.91 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -62.88 3.87 -59.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085838102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.158 kcal (2) G-P(sol) polarization free energy of solvation -62.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds