Wall clock time and date at job start Mon Mar 30 2020 02:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47177 * 2 1 4 4 C 1.46894 * 111.00268 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47298 * 34.99528 * 4 3 2 6 6 C 1.52998 * 109.47371 * 274.99965 * 4 3 2 7 7 C 1.50701 * 109.47385 * 154.99629 * 4 3 2 8 8 C 1.41176 * 126.24305 * 39.69337 * 7 4 3 9 9 C 1.34803 * 107.50634 * 179.83097 * 8 7 4 10 10 N 1.36847 * 108.18312 * 0.42793 * 9 8 7 11 11 C 1.37501 * 125.69117 * 179.70715 * 10 9 8 12 12 H 1.08003 * 119.99810 * 199.23814 * 11 10 9 13 13 C 1.38923 * 120.00129 * 19.23833 * 11 10 9 14 14 N 1.31358 * 119.99532 * 10.45754 * 13 11 10 15 15 Si 1.86795 * 120.00072 * 190.45720 * 13 11 10 16 16 H 1.48494 * 109.47001 * 90.00118 * 15 13 11 17 17 H 1.48498 * 109.47143 * 210.00392 * 15 13 11 18 18 H 1.48503 * 109.47328 * 329.99813 * 15 13 11 19 19 C 1.34801 * 126.24678 * 220.00173 * 7 4 3 20 20 H 1.09006 * 109.47026 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47031 * 299.99993 * 1 2 3 22 22 H 1.08997 * 109.47437 * 60.00264 * 1 2 3 23 23 H 1.09000 * 109.47430 * 239.99931 * 2 1 3 24 24 H 1.08997 * 109.47437 * 119.99736 * 2 1 3 25 25 H 1.00896 * 110.99823 * 56.04642 * 3 2 1 26 26 H 1.08996 * 109.46985 * 300.00150 * 6 4 3 27 27 H 1.09008 * 109.46886 * 59.99393 * 6 4 3 28 28 H 1.08995 * 109.47529 * 179.97438 * 6 4 3 29 29 H 1.07996 * 126.24186 * 359.97438 * 8 7 4 30 30 H 1.07995 * 125.90880 * 180.17612 * 9 8 7 31 31 H 0.97001 * 119.99533 * 179.97438 * 14 13 11 32 32 H 1.07998 * 125.90846 * 359.97438 * 19 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4243 -0.0006 5 1 3.8736 0.5924 -0.5903 6 6 4.0019 1.3120 1.4361 7 6 3.9557 2.7249 -0.6012 8 6 3.3738 3.9951 -0.3977 9 6 4.0919 4.8884 -1.1073 10 7 5.0939 4.2152 -1.7521 11 6 6.0354 4.7792 -2.5804 12 1 6.5811 4.1607 -3.2776 13 6 6.2847 6.1446 -2.5206 14 7 5.7793 6.8622 -1.5433 15 14 7.3385 6.9599 -3.8297 16 1 6.4738 7.4185 -4.9464 17 1 8.0462 8.1250 -3.2408 18 1 8.3336 5.9841 -4.3427 19 6 5.0022 2.8871 -1.4352 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6442 1.9013 0.7813 26 1 3.6165 2.1437 2.0258 27 1 3.6637 0.3712 1.8705 28 1 5.0915 1.3407 1.4357 29 1 2.5123 4.2117 0.2163 30 1 3.9060 5.9508 -1.1612 31 1 5.9537 7.8155 -1.5013 32 1 5.6555 2.1044 -1.7913 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085838103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:00 Heat of formation + Delta-G solvation = 20.051374 kcal Electronic energy + Delta-G solvation = -13407.064406 eV Core-core repulsion = 11174.243930 eV Total energy + Delta-G solvation = -2232.820476 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44466 -38.00142 -35.31692 -33.29317 -31.32530 -29.13645 -28.40320 -26.70144 -23.51249 -22.75068 -21.43133 -19.91917 -19.10084 -17.36174 -16.47275 -16.12245 -15.71712 -15.18694 -14.76659 -14.39401 -14.06910 -13.78171 -13.46146 -13.30435 -13.11418 -12.77893 -12.76457 -12.48991 -12.46719 -12.15587 -11.97428 -11.85977 -11.53459 -11.06011 -9.34751 -9.09957 -8.60162 -8.33989 -6.29932 1.32892 1.37341 1.51980 2.01485 2.17375 2.55060 3.08052 3.37526 3.59937 4.20810 4.35727 4.41013 4.54953 4.61782 4.72610 4.74712 4.88202 5.02148 5.06605 5.14019 5.18056 5.22831 5.33399 5.40670 5.43447 5.76426 5.92974 6.07856 6.42941 6.66059 6.68889 6.85250 7.34809 7.76356 8.47517 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.067491 B = 0.006586 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.767579 B = 4250.500281 C = 4268.219666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 N -0.691 5.691 4 C 0.173 3.827 5 H 0.069 0.931 6 C -0.161 4.161 7 C -0.175 4.175 8 C -0.239 4.239 9 C -0.038 4.038 10 N -0.277 5.277 11 C -0.384 4.384 12 H 0.108 0.892 13 C -0.001 4.001 14 N -0.880 5.880 15 Si 1.014 2.986 16 H -0.266 1.266 17 H -0.271 1.271 18 H -0.255 1.255 19 C -0.104 4.104 20 H 0.075 0.925 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.036 0.964 25 H 0.340 0.660 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.120 0.880 30 H 0.140 0.860 31 H 0.281 0.719 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 -8.626 2.547 10.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 N -0.322 5.322 4 C 0.063 3.937 5 H 0.087 0.913 6 C -0.220 4.220 7 C -0.183 4.183 8 C -0.263 4.263 9 C -0.175 4.175 10 N 0.064 4.936 11 C -0.512 4.512 12 H 0.126 0.874 13 C -0.206 4.206 14 N -0.512 5.512 15 Si 0.834 3.166 16 H -0.191 1.191 17 H -0.196 1.196 18 H -0.179 1.179 19 C -0.239 4.239 20 H 0.094 0.906 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.158 0.842 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.091 0.909 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.167 -8.204 1.708 9.358 hybrid contribution 0.725 0.506 0.462 0.998 sum -3.442 -7.697 2.170 8.707 Atomic orbital electron populations 1.21725 0.94089 1.02317 1.01989 1.21994 0.96368 0.89008 1.00249 1.60466 1.07404 1.13889 1.50456 1.19519 0.86932 0.92924 0.94306 0.91269 1.22324 1.01508 1.01238 0.96915 1.19121 0.99381 0.94770 1.05025 1.20371 1.03926 0.92907 1.09121 1.21936 0.93283 0.98217 1.04109 1.40442 1.18471 1.05656 1.29037 1.20361 1.19009 0.93826 1.17969 0.87435 1.26582 0.98409 0.96720 0.98921 1.70058 1.42900 1.08537 1.29743 0.84644 0.77549 0.77744 0.76627 1.19091 1.19604 1.17899 1.21617 1.06141 0.86693 1.09426 0.90646 0.92488 0.93106 0.91906 0.94618 0.84174 0.93209 0.91352 0.93082 0.86231 0.84289 0.90880 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 10.17 71.98 0.73 -2.20 16 2 C 0.05 1.29 6.20 86.30 0.54 1.83 16 3 N -0.69 -21.82 6.00 -495.45 -2.97 -24.79 16 4 C 0.17 6.12 3.03 44.17 0.13 6.26 16 5 H 0.07 2.37 7.80 -2.38 -0.02 2.35 16 6 C -0.16 -4.92 9.14 71.98 0.66 -4.26 16 7 C -0.18 -8.07 5.13 -19.93 -0.10 -8.17 16 8 C -0.24 -11.91 10.53 22.20 0.23 -11.67 16 9 C -0.04 -2.15 10.06 83.12 0.84 -1.31 16 10 N -0.28 -15.75 2.91 -350.08 -1.02 -16.77 16 11 C -0.38 -21.55 10.08 83.97 0.85 -20.70 16 12 H 0.11 5.66 7.85 -2.91 -0.02 5.64 16 13 C 0.00 -0.07 5.37 84.93 0.46 0.39 16 14 N -0.88 -49.13 10.82 21.65 0.23 -48.89 16 15 Si 1.01 40.42 29.56 68.60 2.03 42.45 16 16 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 17 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 18 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 19 C -0.10 -5.28 11.28 83.12 0.94 -4.35 16 20 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 21 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.06 1.59 8.05 -2.39 -0.02 1.57 16 24 H 0.04 0.78 7.44 -2.39 -0.02 0.76 16 25 H 0.34 10.18 8.47 -89.70 -0.76 9.42 16 26 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 27 H 0.07 1.68 7.45 -2.38 -0.02 1.66 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.12 5.42 8.06 -2.91 -0.02 5.39 16 30 H 0.14 8.21 6.34 -2.91 -0.02 8.19 16 31 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.14 6.57 8.06 -2.91 -0.02 6.55 16 Total: -1.00 -62.52 270.11 3.87 -58.65 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.33 Total: 33.54 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 5.27 Total: -44.19 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -3.76 Total: -90.45 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -62.52 3.87 -58.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085838103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.704 kcal (2) G-P(sol) polarization free energy of solvation -62.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds