Wall clock time and date at job start Mon Mar 30 2020 02:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 115.54974 * 2 1 4 4 N 1.28797 * 124.99301 * 34.41106 * 3 2 1 5 5 C 1.33648 * 116.06411 * 179.97438 * 4 3 2 6 6 C 1.41148 * 122.86410 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99832 * 174.02925 * 6 5 4 8 8 C 1.39717 * 120.00045 * 354.03465 * 6 5 4 9 9 N 1.31020 * 120.00162 * 6.16438 * 8 6 5 10 10 Si 1.86808 * 120.00127 * 186.16152 * 8 6 5 11 11 H 1.48499 * 109.46550 * 89.99996 * 10 8 6 12 12 H 1.48487 * 109.47412 * 209.99993 * 10 8 6 13 13 H 1.48502 * 109.47141 * 330.00365 * 10 8 6 14 14 C 1.37698 * 114.27111 * 0.02562 * 5 4 3 15 15 S 1.70991 * 108.84147 * 359.72625 * 14 5 4 16 16 C 1.53003 * 117.50074 * 145.67099 * 2 1 3 17 17 C 1.53005 * 117.50163 * 214.33183 * 2 1 3 18 18 H 1.09007 * 109.46935 * 85.58631 * 1 2 3 19 19 H 1.09005 * 109.46978 * 205.57853 * 1 2 3 20 20 H 1.08997 * 109.47517 * 325.58324 * 1 2 3 21 21 H 0.96996 * 120.00028 * 179.97438 * 9 8 6 22 22 H 1.08002 * 125.57905 * 180.02562 * 14 5 4 23 23 H 1.09001 * 117.49718 * 215.00786 * 16 2 1 24 24 H 1.09002 * 117.49716 * 0.02562 * 16 2 1 25 25 H 1.09001 * 117.49775 * 359.96946 * 17 2 1 26 26 H 1.08993 * 117.49910 * 144.97364 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 7 1.7131 2.4015 0.5963 5 6 2.4372 3.5187 0.4795 6 6 2.0594 4.7419 1.0738 7 1 2.7253 5.5912 1.0317 8 6 0.8240 4.8541 1.7167 9 7 0.0689 3.7951 1.8742 10 14 0.2489 6.5141 2.3520 11 1 -0.5204 7.2108 1.2899 12 1 -0.6174 6.3158 3.5415 13 1 1.4274 7.3351 2.7291 14 6 3.5827 3.3749 -0.2710 15 16 3.6913 1.7552 -0.8082 16 6 2.2365 -1.1207 0.7654 17 6 2.2365 -1.1207 -0.7654 18 1 -0.3633 0.0791 -1.0247 19 1 -0.3633 -0.9270 0.4437 20 1 -0.3634 0.8477 0.5808 21 1 -0.7886 3.8729 2.3209 22 1 4.2982 4.1561 -0.4815 23 1 3.1713 -0.8746 1.2689 24 1 1.6112 -1.8583 1.2685 25 1 1.6113 -1.8583 -1.2686 26 1 3.1711 -0.8745 -1.2692 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087554057.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:10 Heat of formation + Delta-G solvation = 54.392030 kcal Electronic energy + Delta-G solvation = -11455.168450 eV Core-core repulsion = 9433.038211 eV Total energy + Delta-G solvation = -2022.130239 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.27679 -36.75098 -33.08037 -29.31277 -27.82472 -25.57789 -23.56808 -22.09940 -19.99749 -17.95158 -17.44503 -15.50346 -15.11886 -14.59424 -13.83551 -13.14634 -12.88443 -12.35223 -12.14186 -11.82064 -11.57162 -11.28868 -11.12492 -10.88814 -10.67984 -10.44747 -9.97900 -9.61839 -9.59986 -9.17213 -7.97202 -7.88599 -7.26097 -6.52030 -4.33290 2.29961 2.92186 3.06533 3.11208 3.14845 3.70082 4.01735 4.13786 4.45123 4.95157 5.17373 5.33377 5.55852 5.69357 5.94034 6.11871 6.27836 6.30210 6.38933 6.48146 6.85614 6.99688 7.14117 7.28019 7.55423 8.22049 8.57690 8.90973 9.64556 10.35687 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.042435 B = 0.010890 C = 0.009019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.676575 B = 2570.499773 C = 3103.845792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.036 4.036 3 C 0.093 3.907 4 N -0.393 5.393 5 C 0.227 3.773 6 C -0.433 4.433 7 H 0.083 0.917 8 C 0.072 3.928 9 N -0.751 5.751 10 Si 0.911 3.089 11 H -0.270 1.270 12 H -0.277 1.277 13 H -0.263 1.263 14 C -0.460 4.460 15 S -0.045 6.045 16 C -0.162 4.162 17 C -0.175 4.175 18 H 0.053 0.947 19 H 0.051 0.949 20 H 0.086 0.914 21 H 0.273 0.727 22 H 0.136 0.864 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 -6.377 -1.726 6.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.040 4.040 3 C -0.190 4.190 4 N -0.106 5.106 5 C 0.105 3.895 6 C -0.468 4.468 7 H 0.102 0.898 8 C -0.150 4.150 9 N -0.374 5.374 10 Si 0.736 3.264 11 H -0.195 1.195 12 H -0.202 1.202 13 H -0.187 1.187 14 C -0.598 4.598 15 S 0.204 5.796 16 C -0.201 4.201 17 C -0.213 4.213 18 H 0.072 0.928 19 H 0.070 0.930 20 H 0.105 0.895 21 H 0.084 0.916 22 H 0.154 0.846 23 H 0.112 0.888 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.214 -6.922 -1.902 7.181 hybrid contribution -0.354 1.752 0.650 1.902 sum -0.568 -5.170 -1.252 5.350 Atomic orbital electron populations 1.21263 0.90581 1.02671 1.01854 1.19418 0.94572 0.85009 1.05029 1.26798 0.94654 0.97151 1.00424 1.67244 1.29059 0.97834 1.16460 1.18012 0.87551 0.91452 0.92483 1.18948 1.01583 0.95564 1.30668 0.89848 1.25981 0.96488 0.98016 0.94501 1.70110 1.08994 1.29027 1.29224 0.86273 0.79309 0.82164 0.78693 1.19489 1.20246 1.18689 1.25092 1.10737 0.98599 1.25388 1.82518 1.28901 1.09094 1.59126 1.23135 1.02618 1.00310 0.94058 1.23130 1.02605 1.00951 0.94577 0.92842 0.92956 0.89529 0.91629 0.84588 0.88773 0.88524 0.88423 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.83 37.16 0.37 -1.50 15 2 C -0.04 -0.68 2.65 -155.66 -0.41 -1.09 15 3 C 0.09 2.23 6.91 -13.55 -0.09 2.14 15 4 N -0.39 -10.86 8.01 -8.36 -0.07 -10.93 15 5 C 0.23 6.51 6.46 -86.17 -0.56 5.96 15 6 C -0.43 -12.22 9.23 -37.93 -0.35 -12.57 15 7 H 0.08 2.24 7.85 -52.49 -0.41 1.83 15 8 C 0.07 1.91 5.49 -17.35 -0.10 1.82 15 9 N -0.75 -20.36 11.72 55.54 0.65 -19.71 15 10 Si 0.91 19.37 29.56 -169.99 -5.03 14.34 15 11 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 12 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 13 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 14 C -0.46 -12.21 10.98 30.54 0.34 -11.88 15 15 S -0.05 -1.04 21.92 -107.50 -2.36 -3.40 15 16 C -0.16 -2.58 9.88 -26.69 -0.26 -2.85 15 17 C -0.17 -2.67 9.77 -26.69 -0.26 -2.93 15 18 H 0.05 0.88 8.14 -51.92 -0.42 0.46 15 19 H 0.05 0.76 7.90 -51.93 -0.41 0.35 15 20 H 0.09 1.82 7.70 -51.93 -0.40 1.42 15 21 H 0.27 6.73 8.30 -40.82 -0.34 6.39 15 22 H 0.14 3.46 8.06 -52.49 -0.42 3.03 15 23 H 0.09 1.56 8.14 -51.93 -0.42 1.14 15 24 H 0.10 1.30 8.05 -51.93 -0.42 0.89 15 25 H 0.10 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.10 1.50 7.20 -51.93 -0.37 1.13 15 LS Contribution 243.20 15.07 3.67 3.67 Total: -1.00 -29.87 243.20 -7.30 -37.18 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -2.84 Total: 1.76 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -1.33 Total: -22.92 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.58 Total: -30.64 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -2.36 Total: -3.40 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.87 -7.30 -37.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087554057.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.568 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds