Wall clock time and date at job start Mon Mar 30 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86797 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47429 * 85.01361 * 3 2 1 5 5 H 1.48496 * 109.47030 * 325.01232 * 3 2 1 6 6 H 1.48505 * 109.47069 * 205.01309 * 3 2 1 7 7 C 1.40071 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99861 * 187.94754 * 7 2 1 9 9 C 1.39910 * 120.00232 * 7.95990 * 7 2 1 10 10 C 1.38285 * 125.40945 * 187.67474 * 9 7 2 11 11 C 1.36801 * 114.19825 * 179.82272 * 10 9 7 12 12 C 1.50697 * 122.32732 * 180.20451 * 11 10 9 13 13 H 1.08998 * 112.96338 * 328.60767 * 12 11 10 14 14 C 1.53940 * 113.75922 * 100.25374 * 12 11 10 15 15 C 1.53938 * 86.34379 * 138.03771 * 14 12 11 16 16 N 1.47965 * 86.17931 * 336.27855 * 15 14 12 17 17 C 1.34540 * 115.34475 * 0.46244 * 11 10 9 18 18 S 1.75791 * 110.14117 * 359.74411 * 17 11 10 19 19 H 0.97001 * 120.00298 * 0.02562 * 1 2 3 20 20 H 1.07995 * 122.89750 * 0.02562 * 10 9 7 21 21 H 1.09003 * 113.73347 * 252.39874 * 14 12 11 22 22 H 1.08998 * 113.73687 * 23.57124 * 14 12 11 23 23 H 1.08999 * 113.75622 * 90.59614 * 15 14 12 24 24 H 1.08992 * 113.75841 * 221.85047 * 15 14 12 25 25 H 1.00902 * 111.00045 * 271.79780 * 16 15 14 26 26 H 1.08001 * 124.92677 * 179.78024 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1073 1.3947 5 1 1.4968 2.6199 -0.8028 6 1 3.5890 1.4120 -0.5920 7 6 2.0090 -1.2131 0.0005 8 1 3.0813 -1.2175 0.1299 9 6 1.3196 -2.4190 -0.1667 10 6 1.8694 -3.6811 -0.0358 11 6 0.9843 -4.7028 -0.2460 12 6 1.3871 -6.1514 -0.1453 13 1 2.4239 -6.3255 -0.4332 14 6 0.9943 -6.8132 1.1879 15 6 0.5792 -8.0336 0.3465 16 7 0.4262 -7.0827 -0.7768 17 6 -0.2695 -4.3244 -0.5541 18 16 -0.3824 -2.5704 -0.5840 19 1 -0.4850 0.8400 -0.0004 20 1 2.9070 -3.8458 0.2141 21 1 1.8397 -7.0033 1.8492 22 1 0.1621 -6.3227 1.6928 23 1 1.3791 -8.7596 0.2015 24 1 -0.3567 -8.4907 0.6678 25 1 -0.5024 -6.6883 -0.7927 26 1 -1.0880 -5.0003 -0.7534 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104662560.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:29 Heat of formation + Delta-G solvation = 42.797671 kcal Electronic energy + Delta-G solvation = -11254.890696 eV Core-core repulsion = 9232.257688 eV Total energy + Delta-G solvation = -2022.633008 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.23929 -35.51734 -33.76263 -29.23344 -26.74794 -25.59284 -24.80212 -21.57838 -19.60800 -18.09707 -17.44262 -15.51413 -15.04400 -14.84882 -14.31822 -13.34900 -12.86556 -12.45144 -12.26754 -12.00369 -11.80656 -11.42098 -11.05297 -10.95158 -10.55484 -10.36697 -10.29185 -9.80465 -9.42092 -8.85275 -8.07977 -7.37479 -7.05602 -6.58804 -4.49162 2.60494 2.94817 3.00101 3.08582 3.65145 3.73304 3.97195 4.11514 4.62260 4.96891 5.18861 5.28532 5.70357 5.99893 6.08543 6.15664 6.34249 6.49697 6.66232 6.69174 6.87756 7.27087 7.59340 7.78143 7.83494 8.08956 8.19031 8.55755 8.61161 9.88327 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.074896 B = 0.008210 C = 0.007659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.762479 B = 3409.462086 C = 3655.155983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.055 3.945 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.397 4.397 8 H 0.092 0.908 9 C 0.045 3.955 10 C -0.348 4.348 11 C -0.039 4.039 12 C 0.112 3.888 13 H 0.099 0.901 14 C -0.176 4.176 15 C 0.010 3.990 16 N -0.660 5.660 17 C -0.402 4.402 18 S 0.114 5.886 19 H 0.294 0.706 20 H 0.100 0.900 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.339 0.661 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 -3.704 1.441 3.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.165 4.165 3 Si 0.754 3.246 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.433 4.433 8 H 0.110 0.890 9 C -0.076 4.076 10 C -0.373 4.373 11 C -0.051 4.051 12 C 0.000 4.000 13 H 0.117 0.883 14 C -0.215 4.215 15 C -0.121 4.121 16 N -0.289 5.289 17 C -0.537 4.537 18 S 0.375 5.625 19 H 0.106 0.894 20 H 0.118 0.882 21 H 0.080 0.920 22 H 0.101 0.899 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.157 0.843 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.712 -2.958 0.457 3.076 hybrid contribution 1.014 0.079 1.211 1.581 sum 0.302 -2.879 1.667 3.341 Atomic orbital electron populations 1.69061 1.07566 1.30377 1.34146 1.26181 0.95076 1.02433 0.92802 0.85899 0.80323 0.79133 0.79285 1.19216 1.19734 1.18162 1.19114 0.95890 0.89049 1.39279 0.88955 1.21757 0.94596 0.95632 0.95569 1.19478 0.99385 0.90783 1.27628 1.17979 0.93380 0.92747 1.00980 1.21713 0.97129 0.90121 0.91084 0.88336 1.24524 1.01883 0.96416 0.98688 1.23501 1.01016 0.95715 0.91829 1.65263 1.11198 1.10774 1.41682 1.24957 0.99737 1.01369 1.27619 1.84291 1.10757 0.96315 1.71143 0.89386 0.88221 0.91990 0.89925 0.89269 0.91711 0.84343 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.44 10.82 55.56 0.60 -18.84 15 2 C 0.06 1.33 5.47 -17.27 -0.09 1.24 15 3 Si 0.93 17.91 29.57 -169.99 -5.03 12.88 15 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 15 7 C -0.40 -10.36 9.28 -38.27 -0.36 -10.72 15 8 H 0.09 2.29 7.86 -52.48 -0.41 1.88 15 9 C 0.04 1.21 6.15 -38.94 -0.24 0.97 15 10 C -0.35 -8.97 9.99 -40.08 -0.40 -9.37 15 11 C -0.04 -0.92 5.25 -106.45 -0.56 -1.47 15 12 C 0.11 2.21 4.68 -67.80 -0.32 1.89 15 13 H 0.10 1.91 8.14 -51.93 -0.42 1.49 15 14 C -0.18 -2.95 7.82 -25.79 -0.20 -3.15 15 15 C 0.01 0.14 8.90 -2.76 -0.02 0.12 15 16 N -0.66 -11.96 8.44 -111.50 -0.94 -12.90 15 17 C -0.40 -9.63 10.39 29.42 0.31 -9.32 15 18 S 0.11 2.92 20.42 -107.50 -2.20 0.73 15 19 H 0.29 6.54 8.30 -40.82 -0.34 6.21 15 20 H 0.10 2.47 8.06 -52.49 -0.42 2.04 15 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 15 22 H 0.08 1.46 8.09 -51.93 -0.42 1.04 15 23 H 0.09 1.19 8.14 -51.93 -0.42 0.76 15 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.34 6.18 6.43 -39.29 -0.25 5.92 15 26 H 0.12 2.56 6.46 -52.49 -0.34 2.22 15 LS Contribution 236.26 15.07 3.56 3.56 Total: -1.00 -27.22 236.26 -8.56 -35.78 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -2.67 Total: 8.61 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -1.89 Total: -29.82 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: -0.34 Total: -31.74 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.20 Total: 0.73 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.22 -8.56 -35.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104662560.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.575 kcal (2) G-P(sol) polarization free energy of solvation -27.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds