Wall clock time and date at job start Mon Mar 30 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86797 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47429 * 85.01361 * 3 2 1 5 5 H 1.48496 * 109.47030 * 325.01232 * 3 2 1 6 6 H 1.48505 * 109.47069 * 205.01309 * 3 2 1 7 7 C 1.40071 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99861 * 187.94754 * 7 2 1 9 9 C 1.39910 * 120.00232 * 7.95990 * 7 2 1 10 10 C 1.38285 * 125.40945 * 187.67474 * 9 7 2 11 11 C 1.36801 * 114.19825 * 179.82272 * 10 9 7 12 12 C 1.50697 * 122.32732 * 180.20451 * 11 10 9 13 13 H 1.08998 * 112.96338 * 328.60767 * 12 11 10 14 14 C 1.53940 * 113.75922 * 100.25374 * 12 11 10 15 15 C 1.53938 * 86.34379 * 138.03771 * 14 12 11 16 16 N 1.47965 * 86.17931 * 336.27855 * 15 14 12 17 17 C 1.34540 * 115.34475 * 0.46244 * 11 10 9 18 18 S 1.75791 * 110.14117 * 359.74411 * 17 11 10 19 19 H 0.97001 * 120.00298 * 0.02562 * 1 2 3 20 20 H 1.07995 * 122.89750 * 0.02562 * 10 9 7 21 21 H 1.09003 * 113.73347 * 252.39874 * 14 12 11 22 22 H 1.08998 * 113.73687 * 23.57124 * 14 12 11 23 23 H 1.08999 * 113.75622 * 90.59614 * 15 14 12 24 24 H 1.08992 * 113.75841 * 221.85047 * 15 14 12 25 25 H 1.00902 * 111.00045 * 271.79780 * 16 15 14 26 26 H 1.08001 * 124.92677 * 179.78024 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1073 1.3947 5 1 1.4968 2.6199 -0.8028 6 1 3.5890 1.4120 -0.5920 7 6 2.0090 -1.2131 0.0005 8 1 3.0813 -1.2175 0.1299 9 6 1.3196 -2.4190 -0.1667 10 6 1.8694 -3.6811 -0.0358 11 6 0.9843 -4.7028 -0.2460 12 6 1.3871 -6.1514 -0.1453 13 1 2.4239 -6.3255 -0.4332 14 6 0.9943 -6.8132 1.1879 15 6 0.5792 -8.0336 0.3465 16 7 0.4262 -7.0827 -0.7768 17 6 -0.2695 -4.3244 -0.5541 18 16 -0.3824 -2.5704 -0.5840 19 1 -0.4850 0.8400 -0.0004 20 1 2.9070 -3.8458 0.2141 21 1 1.8397 -7.0033 1.8492 22 1 0.1621 -6.3227 1.6928 23 1 1.3791 -8.7596 0.2015 24 1 -0.3567 -8.4907 0.6678 25 1 -0.5024 -6.6883 -0.7927 26 1 -1.0880 -5.0003 -0.7534 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104662560.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:29 Heat of formation + Delta-G solvation = 25.321069 kcal Electronic energy + Delta-G solvation = -11255.648538 eV Core-core repulsion = 9232.257688 eV Total energy + Delta-G solvation = -2023.390850 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.70260 -37.35679 -35.62537 -31.12318 -28.16367 -27.21049 -26.59628 -23.26801 -21.11769 -19.92171 -19.30624 -17.31536 -16.65799 -16.55247 -15.76439 -14.89987 -14.46594 -14.07660 -13.79462 -13.72146 -13.50099 -13.05419 -12.74419 -12.70521 -12.20791 -11.99608 -11.72751 -11.55615 -11.21482 -10.78693 -9.53537 -9.28971 -8.90890 -8.53275 -6.47050 0.76846 1.36660 1.47675 1.54189 1.68913 2.06232 2.17131 2.22958 3.03987 3.29362 3.75169 3.94576 4.40999 4.65946 4.71008 4.81012 4.82720 4.91037 5.00299 5.05391 5.30029 5.35259 5.65636 5.92005 6.14966 6.24278 6.41257 6.62740 6.66064 8.07020 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.074896 B = 0.008210 C = 0.007659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.762479 B = 3409.462086 C = 3655.155983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.017 3.983 3 Si 1.007 2.993 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.255 1.255 7 C -0.429 4.429 8 H 0.095 0.905 9 C 0.015 3.985 10 C -0.376 4.376 11 C -0.038 4.038 12 C 0.100 3.900 13 H 0.100 0.900 14 C -0.170 4.170 15 C 0.024 3.976 16 N -0.669 5.669 17 C -0.407 4.407 18 S 0.087 5.913 19 H 0.305 0.695 20 H 0.099 0.901 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.089 0.911 25 H 0.337 0.663 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 -3.901 1.755 4.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.201 4.201 3 Si 0.826 3.174 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.179 1.179 7 C -0.464 4.464 8 H 0.113 0.887 9 C -0.105 4.105 10 C -0.401 4.401 11 C -0.050 4.050 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.208 4.208 15 C -0.105 4.105 16 N -0.299 5.299 17 C -0.541 4.541 18 S 0.347 5.653 19 H 0.118 0.882 20 H 0.118 0.882 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.128 0.872 24 H 0.107 0.893 25 H 0.154 0.846 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.450 -3.190 0.775 3.314 hybrid contribution 0.904 0.112 1.119 1.443 sum 0.454 -3.078 1.893 3.642 Atomic orbital electron populations 1.69112 1.08993 1.32079 1.33176 1.27173 0.95889 1.05611 0.91389 0.84778 0.78793 0.74075 0.79773 1.18192 1.18491 1.17895 1.19470 0.96356 0.90021 1.40549 0.88696 1.22180 0.95381 0.96677 0.96291 1.19720 0.99911 0.91315 1.29132 1.18308 0.92789 0.94697 0.99231 1.21768 0.97599 0.88027 0.93833 0.88179 1.24421 1.01992 0.96832 0.97599 1.23616 1.02868 0.94830 0.89201 1.65261 1.10613 1.10829 1.43178 1.25138 1.00606 1.00510 1.27887 1.84152 1.10681 0.98317 1.72125 0.88228 0.88245 0.90444 0.91110 0.87230 0.89288 0.84631 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.01 10.82 21.86 0.24 -39.77 15 2 C 0.02 0.83 5.47 85.28 0.47 1.30 15 3 Si 1.01 35.83 29.57 68.60 2.03 37.86 15 4 H -0.26 -8.75 7.11 99.48 0.71 -8.04 15 5 H -0.26 -8.74 7.11 99.48 0.71 -8.03 15 6 H -0.26 -8.92 7.11 99.48 0.71 -8.21 15 7 C -0.43 -22.74 9.28 23.12 0.21 -22.53 15 8 H 0.10 4.80 7.86 -2.91 -0.02 4.78 15 9 C 0.01 0.81 6.15 22.69 0.14 0.95 15 10 C -0.38 -19.84 9.99 21.94 0.22 -19.62 15 11 C -0.04 -1.84 5.25 -21.05 -0.11 -1.95 15 12 C 0.10 3.85 4.68 44.27 0.21 4.06 15 13 H 0.10 3.79 8.14 -2.39 -0.02 3.77 15 14 C -0.17 -5.34 7.82 31.24 0.24 -5.10 15 15 C 0.02 0.64 8.90 86.41 0.77 1.41 15 16 N -0.67 -22.98 8.44 -506.69 -4.28 -27.25 15 17 C -0.41 -19.59 10.39 66.97 0.70 -18.89 15 18 S 0.09 4.56 20.42 -56.49 -1.15 3.41 15 19 H 0.31 13.41 8.30 -92.71 -0.77 12.64 15 20 H 0.10 5.07 8.06 -2.91 -0.02 5.05 15 21 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 22 H 0.07 2.40 8.09 -2.39 -0.02 2.38 15 23 H 0.11 2.48 8.14 -2.39 -0.02 2.46 15 24 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 25 H 0.34 11.71 6.43 -89.69 -0.58 11.14 15 26 H 0.14 5.88 6.46 -2.91 -0.02 5.86 15 Total: -1.00 -58.53 236.26 0.29 -58.24 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.61 Total: 27.88 kcal Atomic # 6 Polarization: -63.21 SS G_CDS: 2.85 Total: -60.36 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -4.04 Total: -67.02 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.15 Total: 3.41 kcal Total: -58.53 0.29 -58.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104662560.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.558 kcal (2) G-P(sol) polarization free energy of solvation -58.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds