Wall clock time and date at job start Mon Mar 30 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38329 * 119.95740 * 279.71996 * 12 9 7 14 14 C 1.38273 * 120.15773 * 179.77014 * 13 12 9 15 15 C 1.38104 * 120.08296 * 0.51154 * 14 13 12 16 16 C 1.38958 * 119.91687 * 359.74247 * 15 14 13 17 17 S 1.76196 * 120.07756 * 179.97438 * 16 15 14 18 18 C 1.38059 * 119.96043 * 99.99815 * 12 9 7 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 21 21 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 22 22 H 1.07997 * 119.91735 * 0.02562 * 13 12 9 23 23 H 1.08008 * 119.96160 * 180.25467 * 14 13 12 24 24 H 1.08002 * 120.04325 * 179.72987 * 15 14 13 25 25 H 1.34495 * 103.00411 * 270.02351 * 17 16 15 26 26 H 1.07997 * 120.03766 * 0.02562 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8786 -0.6821 -0.8838 11 7 3.9962 -0.4992 1.2058 12 6 4.0138 -2.6149 0.0107 13 6 4.0483 -3.3313 1.1936 14 6 4.5039 -4.6368 1.2020 15 6 4.9362 -5.2267 0.0305 16 6 4.9079 -4.5084 -1.1587 17 16 5.4591 -5.2567 -2.6556 18 6 4.4443 -3.1981 -1.1643 19 1 -0.4849 0.8400 0.0004 20 1 3.6692 -0.9550 2.0445 21 1 5.0028 -0.4291 1.2014 22 1 3.7147 -2.8711 2.1119 23 1 4.5256 -5.1945 2.1267 24 1 5.2960 -6.2450 0.0387 25 1 6.7693 -4.9541 -2.6807 26 1 4.4217 -2.6366 -2.0865 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104675304.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:28 Heat of formation + Delta-G solvation = 32.653633 kcal Electronic energy + Delta-G solvation = -11351.683583 eV Core-core repulsion = 9328.610697 eV Total energy + Delta-G solvation = -2023.072886 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.96220 -34.90086 -31.90095 -30.71616 -29.65633 -26.34038 -23.05320 -22.35388 -20.22500 -17.53073 -16.90517 -16.28592 -15.11137 -14.94189 -14.40761 -14.05447 -13.47747 -13.26445 -12.57220 -12.35864 -11.80600 -11.57716 -11.10279 -10.81732 -10.39472 -10.26767 -9.96686 -9.32760 -8.59144 -8.56647 -8.20382 -8.06576 -7.27783 -6.03113 -4.14170 1.24258 1.76437 1.90723 2.95088 3.49155 3.59603 3.89703 4.10094 4.67923 5.14881 5.26119 5.29448 5.52248 5.72428 5.83717 5.90817 6.05031 6.36213 6.59612 6.66784 6.72268 7.13264 7.24426 7.55263 8.09976 8.27437 8.63687 8.96952 9.60305 11.06465 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.043819 B = 0.008869 C = 0.008396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.832384 B = 3156.265487 C = 3334.206195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.086 3.914 3 Si 0.866 3.134 4 H -0.297 1.297 5 H -0.304 1.304 6 H -0.193 1.193 7 C -0.522 4.522 8 H 0.070 0.930 9 C 0.218 3.782 10 H 0.047 0.953 11 N -0.834 5.834 12 C -0.072 4.072 13 C -0.091 4.091 14 C -0.129 4.129 15 C -0.096 4.096 16 C -0.109 4.109 17 S -0.141 6.141 18 C -0.071 4.071 19 H 0.264 0.736 20 H 0.330 0.670 21 H 0.308 0.692 22 H 0.124 0.876 23 H 0.121 0.879 24 H 0.124 0.876 25 H 0.067 0.933 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.592 -7.206 0.718 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.118 4.118 3 Si 0.693 3.307 4 H -0.224 1.224 5 H -0.231 1.231 6 H -0.114 1.114 7 C -0.560 4.560 8 H 0.088 0.912 9 C 0.109 3.891 10 H 0.065 0.935 11 N -0.363 5.363 12 C -0.076 4.076 13 C -0.110 4.110 14 C -0.149 4.149 15 C -0.116 4.116 16 C -0.221 4.221 17 S 0.016 5.984 18 C -0.093 4.093 19 H 0.073 0.927 20 H 0.144 0.856 21 H 0.119 0.881 22 H 0.142 0.858 23 H 0.139 0.861 24 H 0.142 0.858 25 H 0.031 0.969 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.107 -6.939 -0.366 13.102 hybrid contribution 1.217 0.538 1.036 1.686 sum 12.324 -6.401 0.670 13.903 Atomic orbital electron populations 1.69954 1.06976 1.27430 1.49052 1.24986 0.94509 1.00076 0.92271 0.87207 0.84586 0.81025 0.77860 1.22409 1.23094 1.11408 1.20705 0.87028 0.94617 1.53682 0.91178 1.18621 0.96609 0.83380 0.90500 0.93541 1.60087 1.12703 1.57722 1.05755 1.21354 0.93944 1.00210 0.92100 1.21198 0.97114 0.93973 0.98682 1.21091 1.00616 0.95526 0.97636 1.21339 0.99572 0.99141 0.91591 1.21113 1.08649 0.97395 0.94917 1.85891 1.10821 1.73013 1.28662 1.21512 0.96057 0.93054 0.98645 0.92704 0.85597 0.88110 0.85780 0.86068 0.85830 0.96872 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.72 15 2 C 0.09 2.45 5.47 -17.82 -0.10 2.36 15 3 Si 0.87 21.22 26.94 -169.99 -4.58 16.64 15 4 H -0.30 -7.41 7.11 56.52 0.40 -7.00 15 5 H -0.30 -7.69 7.11 56.52 0.40 -7.28 15 6 H -0.19 -4.31 5.16 56.52 0.29 -4.02 15 7 C -0.52 -14.24 9.29 -34.44 -0.32 -14.56 15 8 H 0.07 2.13 7.98 -52.49 -0.42 1.71 15 9 C 0.22 4.79 2.35 -70.02 -0.16 4.63 15 10 H 0.05 1.05 7.43 -51.93 -0.39 0.66 15 11 N -0.83 -16.28 5.64 -6.65 -0.04 -16.32 15 12 C -0.07 -1.39 4.88 -104.65 -0.51 -1.90 15 13 C -0.09 -1.56 9.29 -39.53 -0.37 -1.93 15 14 C -0.13 -1.91 10.04 -39.62 -0.40 -2.31 15 15 C -0.10 -1.42 9.79 -39.36 -0.39 -1.81 15 16 C -0.11 -1.78 6.11 -39.04 -0.24 -2.02 15 17 S -0.14 -2.02 25.78 -107.50 -2.77 -4.79 15 18 C -0.07 -1.30 9.41 -39.37 -0.37 -1.67 15 19 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 20 H 0.33 6.15 7.33 -39.29 -0.29 5.86 15 21 H 0.31 5.16 9.06 -39.29 -0.36 4.81 15 22 H 0.12 2.02 6.65 -52.49 -0.35 1.67 15 23 H 0.12 1.44 8.06 -52.48 -0.42 1.02 15 24 H 0.12 1.54 8.06 -52.49 -0.42 1.11 15 25 H 0.07 0.86 9.07 97.61 0.89 1.75 15 26 H 0.13 2.30 8.03 -52.49 -0.42 1.87 15 LS Contribution 238.31 15.07 3.59 3.59 Total: -1.00 -30.05 238.31 -7.30 -37.35 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -1.42 Total: 9.46 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.85 Total: -19.22 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.74 Total: -43.04 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.58 Total: 16.64 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -2.77 Total: -4.79 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.05 -7.30 -37.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104675304.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.006 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds