Wall clock time and date at job start Mon Mar 30 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38329 * 119.95740 * 279.71996 * 12 9 7 14 14 C 1.38273 * 120.15773 * 179.77014 * 13 12 9 15 15 C 1.38104 * 120.08296 * 0.51154 * 14 13 12 16 16 C 1.38958 * 119.91687 * 359.74247 * 15 14 13 17 17 S 1.76196 * 120.07756 * 179.97438 * 16 15 14 18 18 C 1.38059 * 119.96043 * 99.99815 * 12 9 7 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 21 21 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 22 22 H 1.07997 * 119.91735 * 0.02562 * 13 12 9 23 23 H 1.08008 * 119.96160 * 180.25467 * 14 13 12 24 24 H 1.08002 * 120.04325 * 179.72987 * 15 14 13 25 25 H 1.34495 * 103.00411 * 270.02351 * 17 16 15 26 26 H 1.07997 * 120.03766 * 0.02562 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8786 -0.6821 -0.8838 11 7 3.9962 -0.4992 1.2058 12 6 4.0138 -2.6149 0.0107 13 6 4.0483 -3.3313 1.1936 14 6 4.5039 -4.6368 1.2020 15 6 4.9362 -5.2267 0.0305 16 6 4.9079 -4.5084 -1.1587 17 16 5.4591 -5.2567 -2.6556 18 6 4.4443 -3.1981 -1.1643 19 1 -0.4849 0.8400 0.0004 20 1 3.6692 -0.9550 2.0445 21 1 5.0028 -0.4291 1.2014 22 1 3.7147 -2.8711 2.1119 23 1 4.5256 -5.1945 2.1267 24 1 5.2960 -6.2450 0.0387 25 1 6.7693 -4.9541 -2.6807 26 1 4.4217 -2.6366 -2.0865 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104675304.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:28 Heat of formation + Delta-G solvation = 12.143251 kcal Electronic energy + Delta-G solvation = -11352.572980 eV Core-core repulsion = 9328.610697 eV Total energy + Delta-G solvation = -2023.962283 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.30251 -36.55541 -33.97849 -31.99328 -31.04747 -28.27872 -24.65465 -23.65851 -21.77038 -18.95818 -18.74754 -17.57646 -16.74290 -16.41758 -15.96633 -15.65726 -14.99629 -14.56379 -14.28467 -13.91957 -13.49554 -13.00798 -12.72971 -12.53883 -12.08197 -11.72368 -11.57535 -11.39758 -10.73494 -9.84105 -9.61193 -9.21271 -8.89277 -8.23093 -6.36895 0.00852 0.47157 0.70614 1.52650 1.59666 1.83452 1.95325 2.61779 2.80082 3.15768 3.94172 4.03574 4.19358 4.24428 4.47852 4.57618 4.71302 5.03161 5.09567 5.33255 5.43864 5.51890 5.74824 5.96277 6.15417 6.49148 6.78763 7.03602 7.41364 8.90295 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.043819 B = 0.008869 C = 0.008396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.832384 B = 3156.265487 C = 3334.206195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.026 3.974 3 Si 0.929 3.071 4 H -0.303 1.303 5 H -0.315 1.315 6 H -0.153 1.153 7 C -0.517 4.517 8 H 0.023 0.977 9 C 0.228 3.772 10 H 0.041 0.959 11 N -0.835 5.835 12 C -0.098 4.098 13 C -0.100 4.100 14 C -0.121 4.121 15 C -0.088 4.088 16 C -0.118 4.118 17 S -0.137 6.137 18 C -0.090 4.090 19 H 0.262 0.738 20 H 0.337 0.663 21 H 0.331 0.669 22 H 0.129 0.871 23 H 0.158 0.842 24 H 0.155 0.845 25 H 0.084 0.916 26 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.105 -8.064 1.434 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.173 4.173 3 Si 0.755 3.245 4 H -0.231 1.231 5 H -0.244 1.244 6 H -0.074 1.074 7 C -0.555 4.555 8 H 0.042 0.958 9 C 0.117 3.883 10 H 0.059 0.941 11 N -0.366 5.366 12 C -0.102 4.102 13 C -0.119 4.119 14 C -0.140 4.140 15 C -0.109 4.109 16 C -0.230 4.230 17 S 0.020 5.980 18 C -0.111 4.111 19 H 0.071 0.929 20 H 0.152 0.848 21 H 0.144 0.856 22 H 0.147 0.853 23 H 0.175 0.825 24 H 0.172 0.828 25 H 0.049 0.951 26 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.654 -7.818 0.358 15.737 hybrid contribution 0.464 0.628 0.784 1.106 sum 14.118 -7.190 1.142 15.884 Atomic orbital electron populations 1.70107 1.08974 1.28122 1.51938 1.25922 0.95104 1.03979 0.92258 0.86319 0.84658 0.75974 0.77579 1.23057 1.24377 1.07372 1.20953 0.90149 0.92456 1.51939 0.95836 1.18234 0.93046 0.85808 0.91162 0.94086 1.59714 1.14479 1.57319 1.05048 1.21106 0.96266 0.99242 0.93627 1.21349 0.97373 0.95114 0.98036 1.21467 0.98805 0.94556 0.99207 1.21766 0.98021 1.00238 0.90834 1.21301 1.08394 0.96820 0.96484 1.85868 1.12036 1.72227 1.27846 1.21537 0.97185 0.94236 0.98116 0.92920 0.84811 0.85583 0.85337 0.82488 0.82760 0.95147 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.47 13.96 21.45 0.30 -60.17 15 2 C 0.03 1.50 5.47 84.66 0.46 1.97 15 3 Si 0.93 44.14 26.94 68.60 1.85 45.99 15 4 H -0.30 -14.58 7.11 99.48 0.71 -13.87 15 5 H -0.32 -15.52 7.11 99.48 0.71 -14.81 15 6 H -0.15 -6.30 5.16 99.48 0.51 -5.79 15 7 C -0.52 -28.87 9.29 25.60 0.24 -28.63 15 8 H 0.02 1.49 7.98 -2.91 -0.02 1.47 15 9 C 0.23 9.87 2.35 43.42 0.10 9.98 15 10 H 0.04 1.82 7.43 -2.38 -0.02 1.81 15 11 N -0.83 -30.79 5.64 -174.95 -0.99 -31.78 15 12 C -0.10 -3.72 4.88 -19.89 -0.10 -3.82 15 13 C -0.10 -3.26 9.29 22.30 0.21 -3.05 15 14 C -0.12 -3.18 10.04 22.25 0.22 -2.96 15 15 C -0.09 -2.32 9.79 22.41 0.22 -2.10 15 16 C -0.12 -3.62 6.11 22.62 0.14 -3.48 15 17 S -0.14 -3.61 25.78 -56.49 -1.46 -5.07 15 18 C -0.09 -3.19 9.41 22.41 0.21 -2.98 15 19 H 0.26 15.79 8.31 -92.71 -0.77 15.02 15 20 H 0.34 11.91 7.33 -89.69 -0.66 11.25 15 21 H 0.33 10.07 9.06 -89.69 -0.81 9.25 15 22 H 0.13 3.96 6.65 -2.91 -0.02 3.94 15 23 H 0.16 2.99 8.06 -2.91 -0.02 2.97 15 24 H 0.15 3.11 8.06 -2.91 -0.02 3.09 15 25 H 0.08 1.93 9.07 73.35 0.67 2.59 15 26 H 0.12 4.38 8.03 -2.91 -0.02 4.36 15 Total: -1.00 -66.46 238.31 1.63 -64.82 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.22 Total: 21.28 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 1.70 Total: -35.07 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -0.69 Total: -91.95 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.85 Total: 45.99 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.46 Total: -5.07 kcal Total: -66.46 1.63 -64.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104675304.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.968 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds