Wall clock time and date at job start Mon Mar 30 2020 02:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 11 11 N 1.46906 * 109.46675 * 299.99446 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.38319 * 119.96666 * 79.99221 * 12 9 7 14 14 C 1.38278 * 120.16580 * 179.97438 * 13 12 9 15 15 C 1.38105 * 120.08197 * 0.02562 * 14 13 12 16 16 C 1.38960 * 119.91489 * 0.02562 * 15 14 13 17 17 S 1.76198 * 120.07985 * 180.02562 * 16 15 14 18 18 C 1.38063 * 119.95711 * 259.72236 * 12 9 7 19 19 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 20 20 H 1.00899 * 110.99290 * 176.04796 * 11 9 7 21 21 H 1.00897 * 111.00195 * 299.99919 * 11 9 7 22 22 H 1.08002 * 119.91873 * 359.97438 * 13 12 9 23 23 H 1.08005 * 119.96380 * 180.02562 * 14 13 12 24 24 H 1.08001 * 120.04743 * 180.02562 * 15 14 13 25 25 H 1.34502 * 102.99914 * 89.99883 * 17 16 15 26 26 H 1.08001 * 120.04060 * 359.97438 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5564 -0.8919 11 7 0.4061 -2.5777 1.1975 12 6 2.2303 -3.6446 -0.0015 13 6 2.8366 -4.0349 1.1789 14 6 3.7354 -5.0857 1.1839 15 6 4.0314 -5.7492 0.0094 16 6 3.4250 -5.3592 -1.1785 17 16 3.7988 -6.2030 -2.6794 18 6 2.5170 -4.3067 -1.1785 19 1 -0.4850 -0.8401 -0.0004 20 1 -0.1579 -3.4143 1.1882 21 1 0.9638 -2.5269 2.0368 22 1 2.6075 -3.5177 2.0989 23 1 4.2067 -5.3881 2.1075 24 1 4.7331 -6.5701 0.0141 25 1 2.8809 -7.1856 -2.7108 26 1 2.0396 -4.0046 -2.0990 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104675307.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:29 Heat of formation + Delta-G solvation = 1.696059 kcal Electronic energy + Delta-G solvation = -11344.340192 eV Core-core repulsion = 9319.924884 eV Total energy + Delta-G solvation = -2024.415308 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.35313 -36.74779 -33.56533 -32.05178 -30.99166 -27.62936 -24.74971 -23.67715 -22.14236 -19.22923 -18.48510 -17.69156 -16.75309 -16.25178 -15.88588 -15.55898 -15.11002 -14.72619 -14.16666 -13.86411 -13.61251 -12.82356 -12.61835 -12.51160 -12.03897 -11.86639 -11.67799 -10.89898 -10.49386 -9.90679 -9.68959 -9.36201 -9.17597 -8.39836 -6.26712 -0.05425 0.41574 0.65650 1.56932 1.64023 1.77818 1.83251 2.61493 2.77183 3.30400 3.89618 3.98297 4.12899 4.20327 4.42086 4.51979 4.67434 5.00017 5.06514 5.27288 5.37903 5.68773 5.85447 5.95687 6.19817 6.64235 6.76028 7.01132 7.64566 8.96553 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.039869 B = 0.008588 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.130214 B = 3259.414894 C = 3443.173629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 1.109 2.891 4 H -0.286 1.286 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.617 4.617 8 H 0.036 0.964 9 C 0.242 3.758 10 H 0.005 0.995 11 N -0.835 5.835 12 C -0.099 4.099 13 C -0.102 4.102 14 C -0.117 4.117 15 C -0.088 4.088 16 C -0.116 4.116 17 S -0.132 6.132 18 C -0.093 4.093 19 H 0.278 0.722 20 H 0.318 0.682 21 H 0.333 0.667 22 H 0.124 0.876 23 H 0.161 0.839 24 H 0.159 0.841 25 H 0.083 0.917 26 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 -11.662 1.013 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.213 4.213 3 Si 0.932 3.068 4 H -0.211 1.211 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.655 4.655 8 H 0.055 0.945 9 C 0.132 3.868 10 H 0.023 0.977 11 N -0.364 5.364 12 C -0.103 4.103 13 C -0.121 4.121 14 C -0.137 4.137 15 C -0.108 4.108 16 C -0.228 4.228 17 S 0.025 5.975 18 C -0.114 4.114 19 H 0.090 0.910 20 H 0.129 0.871 21 H 0.147 0.853 22 H 0.142 0.858 23 H 0.178 0.822 24 H 0.176 0.824 25 H 0.047 0.953 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.299 -9.660 -0.087 12.108 hybrid contribution -0.605 -2.586 0.904 2.805 sum 6.694 -12.246 0.817 13.980 Atomic orbital electron populations 1.70677 1.07746 1.32125 1.44793 1.26967 0.96669 1.05423 0.92260 0.83043 0.74145 0.72082 0.77501 1.21135 1.19865 1.20271 1.21963 0.93113 0.92084 1.58384 0.94528 1.18033 0.88277 0.90959 0.89538 0.97707 1.59195 1.28763 1.43527 1.04910 1.21243 0.98957 0.96323 0.93754 1.21290 0.96328 0.96742 0.97701 1.21482 0.97579 0.95302 0.99297 1.21780 0.98410 0.99971 0.90635 1.21310 1.03520 1.01226 0.96721 1.85783 1.46583 1.37588 1.27524 1.21470 0.97085 0.94998 0.97844 0.91045 0.87076 0.85342 0.85784 0.82179 0.82378 0.95297 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.91 13.51 21.45 0.29 -55.63 15 2 C -0.01 -0.53 5.39 84.66 0.46 -0.08 15 3 Si 1.11 50.58 29.90 68.60 2.05 52.63 15 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 15 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 15 7 C -0.62 -34.39 8.70 25.60 0.22 -34.17 15 8 H 0.04 2.07 7.74 -2.91 -0.02 2.04 15 9 C 0.24 11.92 2.47 43.42 0.11 12.03 15 10 H 0.01 0.28 7.86 -2.39 -0.02 0.26 15 11 N -0.83 -37.64 7.62 -174.94 -1.33 -38.97 15 12 C -0.10 -4.07 4.88 -19.89 -0.10 -4.17 15 13 C -0.10 -3.54 9.29 22.30 0.21 -3.34 15 14 C -0.12 -3.20 10.04 22.25 0.22 -2.97 15 15 C -0.09 -2.37 9.79 22.41 0.22 -2.15 15 16 C -0.12 -3.71 6.11 22.63 0.14 -3.57 15 17 S -0.13 -3.59 25.78 -56.49 -1.46 -5.05 15 18 C -0.09 -3.57 9.41 22.41 0.21 -3.36 15 19 H 0.28 17.08 6.39 -92.71 -0.59 16.49 15 20 H 0.32 12.56 9.06 -89.69 -0.81 11.75 15 21 H 0.33 14.12 7.33 -89.70 -0.66 13.46 15 22 H 0.12 4.17 6.66 -2.91 -0.02 4.15 15 23 H 0.16 3.12 8.06 -2.91 -0.02 3.10 15 24 H 0.16 3.21 8.06 -2.91 -0.02 3.19 15 25 H 0.08 2.00 9.07 73.35 0.67 2.67 15 26 H 0.11 4.54 8.03 -2.91 -0.02 4.52 15 Total: -1.00 -63.54 242.47 1.83 -61.71 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.59 Total: 27.07 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 1.69 Total: -41.77 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -1.04 Total: -94.60 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.46 Total: -5.05 kcal Total: -63.54 1.83 -61.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104675307.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.406 kcal (2) G-P(sol) polarization free energy of solvation -63.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds