Wall clock time and date at job start Mon Mar 30 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.39871 * 126.03946 * 299.69749 * 4 2 1 6 6 N 1.30842 * 108.20139 * 179.81535 * 5 4 2 7 7 N 1.40085 * 108.20405 * 0.43595 * 6 5 4 8 8 C 1.46497 * 126.03798 * 179.74330 * 7 6 5 9 9 H 1.09011 * 109.46955 * 334.97374 * 8 7 6 10 10 C 1.52997 * 109.47291 * 214.97631 * 8 7 6 11 11 C 1.50696 * 109.47239 * 94.96976 * 8 7 6 12 12 H 1.07994 * 120.00095 * 0.02562 * 11 8 7 13 13 C 1.37885 * 119.99870 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99982 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99772 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.46817 * 60.00370 * 15 13 11 17 17 H 1.48500 * 109.47100 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47305 * 300.00242 * 15 13 11 19 19 C 1.34950 * 107.92780 * 359.72124 * 7 6 5 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.07997 * 125.89743 * 359.97438 * 5 4 2 28 28 H 1.08995 * 109.47112 * 59.99718 * 10 8 7 29 29 H 1.09001 * 109.47285 * 179.97438 * 10 8 7 30 30 H 1.08997 * 109.46918 * 299.99722 * 10 8 7 31 31 H 0.96996 * 119.99662 * 179.97438 * 14 13 11 32 32 H 1.08000 * 126.12684 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7785 -0.3409 2.5553 6 7 2.3776 -1.1988 3.3408 7 7 3.0410 -2.1368 2.5393 8 6 3.8401 -3.2677 3.0178 9 1 4.2175 -3.0490 4.0168 10 6 5.0166 -3.4991 2.0675 11 6 2.9814 -4.5052 3.0650 12 1 1.9444 -4.4545 2.7679 13 6 3.5202 -5.7024 3.4865 14 7 4.7832 -5.7641 3.8478 15 14 2.4560 -7.2365 3.5444 16 1 1.9419 -7.5339 2.1832 17 1 3.2660 -8.3828 4.0295 18 1 1.3141 -7.0124 4.4668 19 6 2.8136 -1.8152 1.2486 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.1876 0.5047 2.8747 28 1 5.6376 -2.6040 2.0335 29 1 5.6114 -4.3402 2.4238 30 1 4.6393 -3.7177 1.0686 31 1 5.1620 -6.6063 4.1447 32 1 3.1884 -2.3444 0.3850 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145782257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:17 Heat of formation + Delta-G solvation = 37.481059 kcal Electronic energy + Delta-G solvation = -13590.737729 eV Core-core repulsion = 11358.673061 eV Total energy + Delta-G solvation = -2232.064668 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.97522 -37.00934 -35.76835 -33.48340 -30.57727 -29.39616 -27.79146 -27.44997 -24.12851 -22.98514 -21.12370 -20.26867 -18.68465 -17.49981 -16.46741 -15.69132 -15.39927 -15.29223 -14.75199 -14.58137 -13.78836 -13.62830 -13.52322 -13.06568 -12.90991 -12.81840 -12.76440 -12.40853 -12.25884 -12.01227 -11.89639 -11.66762 -11.45231 -11.06523 -10.67424 -10.14234 -9.04326 -8.28647 -6.48005 1.27231 1.38210 1.39116 1.48014 1.99631 2.07984 2.36042 2.98109 3.88941 4.15168 4.26020 4.42314 4.54119 4.56464 4.65188 4.75860 4.90649 4.92444 4.97771 5.05858 5.15691 5.28965 5.31525 5.41095 5.49936 5.58559 5.67897 5.70251 5.94859 6.05975 6.36060 6.65895 7.11587 7.23479 8.74189 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.046447 B = 0.008018 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.698087 B = 3491.298507 C = 3713.000376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.011 4.011 3 C -0.134 4.134 4 C -0.248 4.248 5 C 0.032 3.968 6 N -0.354 5.354 7 N -0.349 5.349 8 C 0.281 3.719 9 H 0.020 0.980 10 C -0.133 4.133 11 C -0.553 4.553 12 H 0.046 0.954 13 C 0.028 3.972 14 N -0.908 5.908 15 Si 0.967 3.033 16 H -0.267 1.267 17 H -0.272 1.272 18 H -0.279 1.279 19 C 0.045 3.955 20 H 0.054 0.946 21 H 0.038 0.962 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.198 0.802 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.272 0.728 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 8.750 -8.669 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 C -0.192 4.192 4 C -0.260 4.260 5 C -0.152 4.152 6 N -0.176 5.176 7 N -0.130 5.130 8 C 0.181 3.819 9 H 0.038 0.962 10 C -0.192 4.192 11 C -0.591 4.591 12 H 0.064 0.936 13 C -0.173 4.173 14 N -0.546 5.546 15 Si 0.792 3.208 16 H -0.192 1.192 17 H -0.197 1.197 18 H -0.204 1.204 19 C -0.104 4.104 20 H 0.073 0.927 21 H 0.057 0.943 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.214 0.786 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.170 8.153 -7.306 11.715 hybrid contribution -0.400 -0.809 -0.296 0.950 sum -4.570 7.344 -7.602 11.516 Atomic orbital electron populations 1.21778 0.94305 1.01054 1.02228 1.19398 0.95579 0.95432 0.92633 1.21765 1.00393 0.94818 1.02214 1.20283 1.09040 1.00633 0.96016 1.23994 1.00239 0.99136 0.91795 1.77207 1.15131 1.03366 1.21924 1.49312 1.37785 1.21739 1.04155 1.18910 0.88530 0.80356 0.94118 0.96219 1.21933 0.97357 1.01360 0.98590 1.21398 0.96692 0.93882 1.47141 0.93589 1.25626 0.96456 1.01568 0.93659 1.69929 1.13328 1.27963 1.43372 0.85470 0.78430 0.78096 0.78852 1.19154 1.19656 1.20414 1.22643 1.00626 0.98206 0.88889 0.92679 0.94325 0.90812 0.90758 0.93810 0.90929 0.92658 0.78556 0.94595 0.89486 0.93018 0.91828 0.80784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.09 71.98 0.65 -2.35 16 2 C -0.01 -0.27 3.28 -11.54 -0.04 -0.31 16 3 C -0.13 -2.80 9.08 71.98 0.65 -2.14 16 4 C -0.25 -8.49 4.80 -20.14 -0.10 -8.59 16 5 C 0.03 1.20 11.45 85.24 0.98 2.18 16 6 N -0.35 -16.62 12.58 -57.02 -0.72 -17.34 16 7 N -0.35 -16.76 3.51 -331.06 -1.16 -17.92 16 8 C 0.28 14.81 3.31 44.24 0.15 14.96 16 9 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 10 C -0.13 -6.22 8.61 71.98 0.62 -5.60 16 11 C -0.55 -31.06 8.84 25.60 0.23 -30.83 16 12 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 13 C 0.03 1.53 5.30 84.66 0.45 1.98 16 14 N -0.91 -50.13 11.32 21.45 0.24 -49.89 16 15 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 C 0.04 1.79 10.48 83.54 0.88 2.67 16 20 H 0.05 1.18 8.03 -2.39 -0.02 1.16 16 21 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.07 1.25 8.14 -2.38 -0.02 1.24 16 23 H 0.07 1.74 8.11 -2.39 -0.02 1.73 16 24 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.12 8.02 -2.39 -0.02 1.10 16 27 H 0.20 5.69 8.06 -2.91 -0.02 5.67 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.09 4.39 6.07 -2.39 -0.01 4.37 16 30 H 0.05 2.21 7.16 -2.39 -0.02 2.20 16 31 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.18 6.18 7.26 -2.91 -0.02 6.16 16 Total: -1.00 -62.09 270.17 5.93 -56.16 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.08 Total: 12.02 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.47 Total: -28.03 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.64 Total: -85.15 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -62.09 5.93 -56.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145782257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.636 kcal (2) G-P(sol) polarization free energy of solvation -62.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds