Wall clock time and date at job start Mon Mar 30 2020 02:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29458 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48503 * 109.46935 * 274.68549 * 3 2 1 5 5 H 1.48495 * 109.47684 * 34.68910 * 3 2 1 6 6 H 1.48499 * 109.46943 * 154.69271 * 3 2 1 7 7 C 1.46662 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99654 * 342.98603 * 7 2 1 9 9 C 1.39651 * 119.99800 * 162.98660 * 7 2 1 10 10 C 1.46605 * 120.64166 * 316.35800 * 9 7 2 11 11 O 1.35248 * 120.60628 * 0.03853 * 10 9 7 12 12 C 1.38753 * 118.78589 * 180.29414 * 10 9 7 13 13 C 1.38013 * 120.04864 * 359.74282 * 12 10 9 14 14 C 1.39051 * 121.36411 * 359.97438 * 13 12 10 15 15 C 1.36005 * 121.25650 * 0.02562 * 14 13 12 16 16 N 1.48008 * 120.08680 * 179.97438 * 15 14 13 17 17 O 1.31701 * 120.00289 * 354.17910 * 16 15 14 18 18 O 1.31700 * 120.00121 * 173.89637 * 16 15 14 19 19 H 0.97000 * 119.99912 * 359.97438 * 1 2 3 20 20 H 0.96696 * 113.99809 * 275.10065 * 11 10 9 21 21 H 1.08001 * 119.97102 * 179.76266 * 12 10 9 22 22 H 1.08001 * 119.31798 * 179.97438 * 13 12 10 23 23 H 1.07997 * 119.37547 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 2.3770 2.1036 -1.3954 5 1 1.4792 2.6221 0.7968 6 1 3.5722 1.4135 0.5985 7 6 2.0279 -1.2701 0.0006 8 1 1.5232 -2.1848 0.2747 9 6 3.3785 -1.2967 -0.3533 10 6 3.8633 -0.5360 -1.5089 11 8 3.0106 0.2056 -2.2520 12 6 5.2120 -0.5949 -1.8296 13 6 6.0719 -1.3553 -1.0634 14 6 5.6177 -2.0737 0.0371 15 6 4.3071 -2.0548 0.4001 16 7 3.8516 -2.8297 1.5760 17 8 4.6901 -3.6284 2.2033 18 8 2.6094 -2.7165 1.9984 19 1 -0.4850 0.8401 0.0004 20 1 2.5528 -0.2944 -2.9415 21 1 5.5891 -0.0451 -2.6793 22 1 7.1194 -1.3931 -1.3239 23 1 6.3188 -2.6579 0.6145 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196690386.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:52 Heat of formation + Delta-G solvation = -27.463042 kcal Electronic energy + Delta-G solvation = -13573.451680 eV Core-core repulsion = 10969.185973 eV Total energy + Delta-G solvation = -2604.265707 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 209.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.57022 -38.82281 -37.08331 -36.12715 -34.57003 -32.83876 -31.15336 -27.94558 -26.19732 -23.32619 -22.37532 -20.38034 -19.32189 -18.34191 -17.73064 -17.53138 -16.32544 -16.29751 -16.07334 -15.70722 -14.88361 -14.31310 -13.63874 -13.33092 -13.22597 -12.78305 -12.38276 -12.17473 -11.68070 -11.50717 -11.36744 -11.23297 -10.99009 -10.06872 -9.69797 -9.43852 -7.01627 -1.16765 0.39029 0.72053 1.18603 1.25326 1.36264 1.46530 2.05920 2.18838 2.76650 3.41482 4.08268 4.13582 4.21052 4.45423 4.62315 4.83513 5.14375 5.29979 5.40561 5.53763 5.67835 5.74456 5.93307 6.11511 6.68534 6.96646 7.42245 Molecular weight = 209.05amu Principal moments of inertia in cm(-1) A = 0.028570 B = 0.017836 C = 0.012423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.819417 B = 1569.457459 C = 2253.287015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.046 3.954 3 Si 0.988 3.012 4 H -0.196 1.196 5 H -0.268 1.268 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.085 0.915 9 C 0.001 3.999 10 C 0.041 3.959 11 O -0.475 6.475 12 C -0.083 4.083 13 C -0.160 4.160 14 C -0.071 4.071 15 C -0.081 4.081 16 N 0.027 4.973 17 O -0.419 6.419 18 O -0.361 6.361 19 H 0.329 0.671 20 H 0.396 0.604 21 H 0.171 0.829 22 H 0.168 0.832 23 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 8.390 -10.487 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.187 4.187 3 Si 0.807 3.193 4 H -0.119 1.119 5 H -0.194 1.194 6 H -0.203 1.203 7 C -0.296 4.296 8 H 0.103 0.897 9 C -0.005 4.005 10 C -0.005 4.005 11 O -0.287 6.287 12 C -0.101 4.101 13 C -0.182 4.182 14 C -0.091 4.091 15 C -0.188 4.188 16 N 0.418 4.582 17 O -0.545 6.545 18 O -0.500 6.500 19 H 0.143 0.857 20 H 0.255 0.745 21 H 0.189 0.811 22 H 0.185 0.815 23 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.191 8.797 -10.112 14.043 hybrid contribution -0.632 -0.882 0.793 1.344 sum 3.559 7.915 -9.319 12.734 Atomic orbital electron populations 1.68873 1.10345 1.35561 1.19048 1.28854 0.95644 1.04374 0.89840 0.85111 0.77999 0.73620 0.82530 1.11853 1.19441 1.20321 1.21889 0.92506 0.95827 1.19333 0.89670 1.18923 0.91988 0.95087 0.94481 1.19661 0.90231 0.98965 0.91680 1.84771 1.58887 1.36072 1.49014 1.21630 0.91030 0.97059 1.00413 1.20910 1.01511 1.00315 0.95470 1.20446 0.91902 0.98780 0.97930 1.20276 0.95593 1.10773 0.92189 1.49910 1.01378 1.02505 1.04429 1.95981 1.51030 1.42258 1.65256 1.96048 1.00308 1.75904 1.77754 0.85661 0.74461 0.81116 0.81500 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -30.69 13.88 23.24 0.32 -30.37 14 2 C 0.05 2.01 5.21 87.24 0.45 2.46 14 3 Si 0.99 35.77 24.68 68.60 1.69 37.46 14 4 H -0.20 -6.05 6.17 99.48 0.61 -5.44 14 5 H -0.27 -9.01 7.11 99.48 0.71 -8.31 14 6 H -0.28 -11.50 7.11 99.48 0.71 -10.79 14 7 C -0.27 -13.42 7.90 24.81 0.20 -13.23 14 8 H 0.09 4.96 6.60 -2.91 -0.02 4.94 14 9 C 0.00 0.03 4.90 -19.93 -0.10 -0.06 14 10 C 0.04 1.48 5.43 24.58 0.13 1.61 14 11 O -0.47 -14.13 8.79 -85.31 -0.75 -14.88 14 12 C -0.08 -2.41 9.99 22.34 0.22 -2.19 14 13 C -0.16 -4.95 9.99 22.41 0.22 -4.73 14 14 C -0.07 -2.99 9.47 21.95 0.21 -2.78 14 15 C -0.08 -4.13 6.89 36.68 0.25 -3.87 14 16 N 0.03 1.65 4.98 -45.74 -0.23 1.42 14 17 O -0.42 -26.14 19.12 3.51 0.07 -26.07 14 18 O -0.36 -23.43 16.52 3.51 0.06 -23.37 14 19 H 0.33 11.76 8.27 -92.71 -0.77 10.99 14 20 H 0.40 8.53 9.06 -74.06 -0.67 7.86 14 21 H 0.17 3.40 8.06 -2.91 -0.02 3.37 14 22 H 0.17 3.63 8.06 -2.91 -0.02 3.60 14 23 H 0.12 5.10 7.51 -2.91 -0.02 5.07 14 Total: -1.00 -70.53 215.69 3.26 -67.27 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.50 Total: 11.31 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 1.59 Total: -22.78 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: 0.09 Total: -28.95 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -0.62 Total: -64.31 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 1.69 Total: 37.46 kcal Total: -70.53 3.26 -67.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196690386.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.805 kcal (2) G-P(sol) polarization free energy of solvation -70.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds