Wall clock time and date at job start Mon Mar 30 2020 02:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29503 * 1 3 3 Si 1.86796 * 120.00442 * 2 1 4 4 H 1.48495 * 109.47519 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46960 * 300.00257 * 3 2 1 6 6 H 1.48503 * 109.46786 * 60.00017 * 3 2 1 7 7 C 1.46535 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99931 * 192.37782 * 7 2 1 9 9 C 1.40352 * 120.00082 * 12.37293 * 7 2 1 10 10 C 1.41316 * 120.26177 * 205.18567 * 9 7 2 11 11 C 1.36473 * 119.92437 * 180.02562 * 10 9 7 12 12 C 1.38706 * 120.48159 * 0.25536 * 11 10 9 13 13 N 1.48009 * 119.73399 * 179.74394 * 12 11 10 14 14 O 1.31702 * 119.99957 * 0.02562 * 13 12 11 15 15 O 1.31705 * 120.00565 * 180.02562 * 13 12 11 16 16 C 1.39318 * 120.53516 * 359.48788 * 12 11 10 17 17 O 1.35895 * 119.97034 * 180.25903 * 16 12 11 18 18 C 1.37985 * 120.05451 * 0.51001 * 16 12 11 19 19 H 0.97006 * 120.00031 * 0.02562 * 1 2 3 20 20 H 1.07993 * 120.03953 * 0.02562 * 10 9 7 21 21 H 1.07992 * 119.76021 * 179.97438 * 11 10 9 22 22 H 0.96704 * 113.99874 * 270.24731 * 17 16 12 23 23 H 1.08000 * 120.23487 * 179.76877 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2291 1.6176 0.0000 4 1 3.6891 1.3463 0.0006 5 1 1.8704 2.3963 -1.2125 6 1 1.8704 2.3963 1.2126 7 6 2.0276 -1.2691 -0.0006 8 1 3.0889 -1.2801 0.1999 9 6 1.3503 -2.4703 -0.2615 10 6 1.8557 -3.6945 0.2315 11 6 1.1917 -4.8585 -0.0269 12 6 0.0243 -4.8513 -0.7759 13 7 -0.6792 -6.1241 -1.0509 14 8 -0.1967 -7.2574 -0.5845 15 8 -1.7878 -6.1236 -1.7620 16 6 -0.4942 -3.6552 -1.2671 17 8 -1.6416 -3.6609 -1.9952 18 6 0.1591 -2.4653 -1.0191 19 1 -0.4850 0.8401 -0.0004 20 1 2.7662 -3.7089 0.8120 21 1 1.5805 -5.7925 0.3508 22 1 -1.5032 -3.7665 -2.9465 23 1 -0.2383 -1.5367 -1.4016 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238684618.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:42 Heat of formation + Delta-G solvation = -22.871439 kcal Electronic energy + Delta-G solvation = -13124.821129 eV Core-core repulsion = 10520.754530 eV Total energy + Delta-G solvation = -2604.066600 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 209.052 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.96972 -36.84452 -36.10382 -34.31211 -32.78169 -30.72653 -29.00709 -27.02318 -23.90474 -21.67207 -20.94859 -18.56321 -17.32085 -16.73654 -16.63440 -15.71848 -14.70335 -14.40658 -14.16523 -13.61999 -13.06125 -12.71073 -12.06771 -11.83809 -11.60709 -11.29730 -10.81341 -10.49601 -10.12050 -9.97764 -9.85862 -9.39859 -9.37812 -8.37425 -8.06075 -7.72735 -5.28154 0.75102 2.26619 2.43122 2.55790 2.65089 2.74080 2.83402 3.23706 3.73001 4.71164 5.05493 5.69901 5.95578 6.06570 6.25591 6.39718 6.63926 6.73425 7.14247 7.16441 7.20804 7.42931 7.60720 7.84285 7.99699 8.37599 8.47921 9.06748 Molecular weight = 209.05amu Principal moments of inertia in cm(-1) A = 0.060688 B = 0.008828 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.268014 B = 3170.925943 C = 3564.664798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.056 3.944 3 Si 0.935 3.065 4 H -0.248 1.248 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.365 4.365 8 H 0.106 0.894 9 C 0.111 3.889 10 C -0.215 4.215 11 C -0.019 4.019 12 C -0.158 4.158 13 N 0.043 4.957 14 O -0.313 6.313 15 O -0.274 6.274 16 C 0.181 3.819 17 O -0.485 6.485 18 C -0.199 4.199 19 H 0.306 0.694 20 H 0.119 0.881 21 H 0.123 0.877 22 H 0.383 0.617 23 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.798 7.126 -0.771 8.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.177 4.177 3 Si 0.755 3.245 4 H -0.171 1.171 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.390 4.390 8 H 0.124 0.876 9 C 0.107 3.893 10 C -0.236 4.236 11 C -0.039 4.039 12 C -0.258 4.258 13 N 0.476 4.524 14 O -0.472 6.472 15 O -0.441 6.441 16 C 0.135 3.865 17 O -0.294 6.294 18 C -0.220 4.220 19 H 0.119 0.881 20 H 0.137 0.863 21 H 0.141 0.859 22 H 0.239 0.761 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.443 7.530 -0.141 8.745 hybrid contribution 0.121 0.181 -0.439 0.490 sum 4.564 7.712 -0.580 8.980 Atomic orbital electron populations 1.69094 1.09191 1.32614 1.21673 1.27932 0.95013 1.03311 0.91420 0.85781 0.81147 0.77740 0.79792 1.17082 1.18510 1.18691 1.21608 0.97016 0.89332 1.31002 0.87566 1.17785 0.91219 0.92654 0.87681 1.20829 1.03338 0.91474 1.07929 1.20078 0.91345 0.98966 0.93475 1.20320 1.02058 0.80417 1.23009 1.49985 1.00671 1.03606 0.98091 1.96103 1.72361 1.18421 1.60274 1.96129 1.10905 1.95894 1.41182 1.18006 0.85068 0.90183 0.93287 1.84813 1.27244 1.95391 1.21998 1.21685 0.98359 0.96149 1.05805 0.88056 0.86324 0.85869 0.76124 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -14.03 10.84 55.98 0.61 -13.43 14 2 C 0.06 1.04 5.41 -15.19 -0.08 0.95 14 3 Si 0.93 13.43 29.66 -169.99 -5.04 8.39 14 4 H -0.25 -3.51 7.11 56.52 0.40 -3.11 14 5 H -0.26 -3.73 7.11 56.52 0.40 -3.33 14 6 H -0.26 -3.77 7.11 56.52 0.40 -3.37 14 7 C -0.37 -7.30 9.32 -35.44 -0.33 -7.63 14 8 H 0.11 1.91 7.96 -52.48 -0.42 1.49 14 9 C 0.11 2.43 5.62 -106.82 -0.60 1.83 14 10 C -0.21 -4.48 9.76 -39.05 -0.38 -4.86 14 11 C -0.02 -0.42 9.49 -40.05 -0.38 -0.80 14 12 C -0.16 -3.91 6.93 -79.38 -0.55 -4.46 14 13 N 0.04 1.15 4.98 34.24 0.17 1.32 14 14 O -0.31 -8.55 19.12 -31.57 -0.60 -9.16 14 15 O -0.27 -7.46 17.85 -39.26 -0.70 -8.17 14 16 C 0.18 4.30 6.68 -39.27 -0.26 4.04 14 17 O -0.49 -10.86 11.38 -41.66 -0.47 -11.33 14 18 C -0.20 -4.53 8.71 -38.56 -0.34 -4.87 14 19 H 0.31 5.25 8.27 -40.82 -0.34 4.92 14 20 H 0.12 2.13 8.06 -52.49 -0.42 1.71 14 21 H 0.12 2.58 7.55 -52.49 -0.40 2.18 14 22 H 0.38 6.76 9.06 45.56 0.41 7.17 14 23 H 0.14 3.22 6.05 -52.49 -0.32 2.90 14 LS Contribution 224.03 15.07 3.38 3.38 Total: -1.00 -28.36 224.03 -5.86 -34.23 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -0.27 Total: 10.58 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.92 Total: -15.81 kcal Atomic # 7 Polarization: -12.88 SS G_CDS: 0.78 Total: -12.11 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.78 Total: -28.65 kcal Atomic # 14 Polarization: 13.43 SS G_CDS: -5.04 Total: 8.39 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -28.36 -5.86 -34.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238684618.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.355 kcal (2) G-P(sol) polarization free energy of solvation -28.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds