Wall clock time and date at job start Mon Mar 30 2020 02:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29457 * 1 3 3 Si 1.86808 * 119.99846 * 2 1 4 4 H 1.48499 * 109.47091 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47176 * 119.99825 * 3 2 1 6 6 H 1.48505 * 109.46651 * 239.99476 * 3 2 1 7 7 C 1.46647 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00501 * 155.41067 * 7 2 1 9 9 C 1.39667 * 119.99925 * 335.40621 * 7 2 1 10 10 C 1.41608 * 120.64144 * 335.05374 * 9 7 2 11 11 C 1.35963 * 119.82715 * 179.75694 * 10 9 7 12 12 C 1.39103 * 121.25838 * 0.52662 * 11 10 9 13 13 N 1.48013 * 119.31838 * 179.70719 * 12 11 10 14 14 O 1.31700 * 119.99674 * 180.02562 * 13 12 11 15 15 O 1.31705 * 120.00151 * 0.02562 * 13 12 11 16 16 C 1.37967 * 121.35809 * 359.73108 * 12 11 10 17 17 C 1.38798 * 120.05443 * 359.97438 * 16 12 11 18 18 O 1.35240 * 120.60845 * 180.02562 * 17 16 12 19 19 H 0.96995 * 119.99853 * 174.18118 * 1 2 3 20 20 H 1.08005 * 120.08836 * 359.97438 * 10 9 7 21 21 H 1.07998 * 119.37141 * 180.25383 * 11 10 9 22 22 H 1.07997 * 119.97742 * 180.02562 * 16 12 11 23 23 H 0.96698 * 113.99736 * 269.97599 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2286 1.6178 0.0000 4 1 1.2635 2.7465 -0.0006 5 1 3.0823 1.6965 1.2125 6 1 3.0824 1.6964 -1.2125 7 6 2.0279 -1.2700 0.0006 8 1 3.0344 -1.3126 -0.3886 9 6 1.4246 -2.4244 0.5045 10 6 0.3847 -2.3364 1.4617 11 6 -0.1943 -3.4708 1.9375 12 6 0.2218 -4.7275 1.5102 13 7 -0.4343 -5.9344 2.0613 14 8 -0.0506 -7.1308 1.6665 15 8 -1.4018 -5.8119 2.9465 16 6 1.2337 -4.8721 0.5836 17 6 1.8593 -3.7507 0.0568 18 8 2.8521 -3.8794 -0.8525 19 1 -0.4850 -0.8357 -0.0852 20 1 0.0501 -1.3705 1.8103 21 1 -0.9896 -3.3950 2.6642 22 1 1.5388 -5.8586 0.2672 23 1 3.7355 -3.9416 -0.4641 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238704513.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:49 Heat of formation + Delta-G solvation = -30.648055 kcal Electronic energy + Delta-G solvation = -13037.069748 eV Core-core repulsion = 10432.665929 eV Total energy + Delta-G solvation = -2604.403819 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 209.052 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.89168 -37.29560 -35.93724 -34.54443 -32.97147 -30.55729 -29.25973 -26.95536 -23.97808 -21.67111 -21.17156 -18.96763 -17.96182 -16.79818 -16.17577 -15.36765 -14.99626 -14.59051 -14.40309 -13.94227 -13.28388 -13.06071 -12.24426 -11.75510 -11.42697 -11.22269 -10.89442 -10.60711 -10.15431 -9.98463 -9.86453 -9.62894 -9.51898 -8.65328 -8.45910 -8.06586 -5.43766 0.64453 2.13922 2.26688 2.63217 2.72563 2.77241 2.86477 3.27597 3.63851 4.44597 4.95322 5.49335 5.76738 5.96747 6.11694 6.37948 6.50709 6.60548 6.62655 6.88954 7.07778 7.16903 7.36366 7.58226 7.71488 8.27210 8.43908 8.84251 Molecular weight = 209.05amu Principal moments of inertia in cm(-1) A = 0.049334 B = 0.009123 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.428960 B = 3068.531436 C = 3538.031022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.017 3.983 3 Si 1.080 2.920 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.368 4.368 8 H 0.107 0.893 9 C 0.054 3.946 10 C -0.214 4.214 11 C -0.018 4.018 12 C -0.134 4.134 13 N 0.044 4.956 14 O -0.306 6.306 15 O -0.303 6.303 16 C -0.043 4.043 17 C -0.009 4.009 18 O -0.480 6.480 19 H 0.318 0.682 20 H 0.125 0.875 21 H 0.122 0.878 22 H 0.128 0.872 23 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.878 6.980 -1.505 9.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.217 4.217 3 Si 0.898 3.102 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.392 4.392 8 H 0.125 0.875 9 C 0.049 3.951 10 C -0.235 4.235 11 C -0.038 4.038 12 C -0.234 4.234 13 N 0.473 4.527 14 O -0.466 6.466 15 O -0.464 6.464 16 C -0.063 4.063 17 C -0.057 4.057 18 O -0.287 6.287 19 H 0.135 0.865 20 H 0.143 0.857 21 H 0.140 0.860 22 H 0.146 0.854 23 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.211 8.770 -1.954 10.386 hybrid contribution 0.228 -2.270 0.462 2.327 sum 5.439 6.500 -1.492 8.606 Atomic orbital electron populations 1.69955 1.08844 1.36559 1.16318 1.29458 0.95404 1.05512 0.91333 0.83413 0.75864 0.71469 0.79414 1.18571 1.18626 1.18625 1.22715 1.01744 0.92517 1.22194 0.87501 1.19234 0.92678 0.92018 0.91181 1.20706 1.02804 0.97075 1.02888 1.20065 0.97008 0.89917 0.96813 1.19236 1.08609 0.82262 1.13299 1.50051 0.99687 1.03633 0.99315 1.96107 1.72191 1.09679 1.68585 1.96108 1.24220 1.95208 1.30825 1.20576 0.94308 0.98904 0.92535 1.19270 0.97635 0.90028 0.98752 1.84722 1.16449 1.95102 1.32385 0.86542 0.85717 0.85988 0.85426 0.78222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -13.95 12.31 55.99 0.69 -13.26 14 2 C 0.02 0.32 5.14 -15.16 -0.08 0.24 14 3 Si 1.08 15.04 30.09 -169.99 -5.11 9.92 14 4 H -0.26 -3.71 7.11 56.52 0.40 -3.31 14 5 H -0.26 -3.50 7.11 56.52 0.40 -3.10 14 6 H -0.26 -3.44 7.11 56.52 0.40 -3.03 14 7 C -0.37 -7.28 9.01 -35.66 -0.32 -7.61 14 8 H 0.11 1.95 7.87 -52.49 -0.41 1.54 14 9 C 0.05 1.15 5.52 -104.72 -0.58 0.57 14 10 C -0.21 -4.57 7.96 -39.11 -0.31 -4.89 14 11 C -0.02 -0.41 9.44 -40.08 -0.38 -0.79 14 12 C -0.13 -3.24 6.89 -79.73 -0.55 -3.79 14 13 N 0.04 1.16 4.98 34.07 0.17 1.33 14 14 O -0.31 -8.29 19.08 -31.57 -0.60 -8.89 14 15 O -0.30 -8.19 19.07 -31.57 -0.60 -8.79 14 16 C -0.04 -0.98 9.50 -39.47 -0.38 -1.35 14 17 C -0.01 -0.20 6.94 -36.02 -0.25 -0.45 14 18 O -0.48 -9.08 12.99 -17.41 -0.23 -9.30 14 19 H 0.32 6.64 6.69 -40.82 -0.27 6.37 14 20 H 0.13 2.55 6.46 -52.48 -0.34 2.21 14 21 H 0.12 2.61 7.50 -52.49 -0.39 2.22 14 22 H 0.13 2.81 7.51 -52.49 -0.39 2.41 14 23 H 0.36 5.06 9.06 45.56 0.41 5.48 14 LS Contribution 225.34 15.07 3.40 3.40 Total: -1.00 -27.54 225.34 -5.33 -32.87 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -0.20 Total: 10.79 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -2.84 Total: -18.05 kcal Atomic # 7 Polarization: -12.79 SS G_CDS: 0.86 Total: -11.93 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -1.43 Total: -26.99 kcal Atomic # 14 Polarization: 15.04 SS G_CDS: -5.11 Total: 9.92 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -27.54 -5.33 -32.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238704513.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.220 kcal (2) G-P(sol) polarization free energy of solvation -27.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds