Wall clock time and date at job start Mon Mar 30 2020 02:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29457 * 1 3 3 Si 1.86808 * 119.99846 * 2 1 4 4 H 1.48499 * 109.47091 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47176 * 119.99825 * 3 2 1 6 6 H 1.48505 * 109.46651 * 239.99476 * 3 2 1 7 7 C 1.46647 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00501 * 155.41067 * 7 2 1 9 9 C 1.39667 * 119.99925 * 335.40621 * 7 2 1 10 10 C 1.41608 * 120.64144 * 335.05374 * 9 7 2 11 11 C 1.35963 * 119.82715 * 179.75694 * 10 9 7 12 12 C 1.39103 * 121.25838 * 0.52662 * 11 10 9 13 13 N 1.48013 * 119.31838 * 179.70719 * 12 11 10 14 14 O 1.31700 * 119.99674 * 180.02562 * 13 12 11 15 15 O 1.31705 * 120.00151 * 0.02562 * 13 12 11 16 16 C 1.37967 * 121.35809 * 359.73108 * 12 11 10 17 17 C 1.38798 * 120.05443 * 359.97438 * 16 12 11 18 18 O 1.35240 * 120.60845 * 180.02562 * 17 16 12 19 19 H 0.96995 * 119.99853 * 174.18118 * 1 2 3 20 20 H 1.08005 * 120.08836 * 359.97438 * 10 9 7 21 21 H 1.07998 * 119.37141 * 180.25383 * 11 10 9 22 22 H 1.07997 * 119.97742 * 180.02562 * 16 12 11 23 23 H 0.96698 * 113.99736 * 269.97599 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2286 1.6178 0.0000 4 1 1.2635 2.7465 -0.0006 5 1 3.0823 1.6965 1.2125 6 1 3.0824 1.6964 -1.2125 7 6 2.0279 -1.2700 0.0006 8 1 3.0344 -1.3126 -0.3886 9 6 1.4246 -2.4244 0.5045 10 6 0.3847 -2.3364 1.4617 11 6 -0.1943 -3.4708 1.9375 12 6 0.2218 -4.7275 1.5102 13 7 -0.4343 -5.9344 2.0613 14 8 -0.0506 -7.1308 1.6665 15 8 -1.4018 -5.8119 2.9465 16 6 1.2337 -4.8721 0.5836 17 6 1.8593 -3.7507 0.0568 18 8 2.8521 -3.8794 -0.8525 19 1 -0.4850 -0.8357 -0.0852 20 1 0.0501 -1.3705 1.8103 21 1 -0.9896 -3.3950 2.6642 22 1 1.5388 -5.8586 0.2672 23 1 3.7355 -3.9416 -0.4641 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238704513.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:49 Heat of formation + Delta-G solvation = -49.039468 kcal Electronic energy + Delta-G solvation = -13037.867259 eV Core-core repulsion = 10432.665929 eV Total energy + Delta-G solvation = -2605.201331 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 209.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.61370 -38.97829 -37.59953 -36.24386 -34.71553 -32.29946 -30.98922 -28.74072 -25.72775 -23.39028 -22.87533 -20.60512 -19.64969 -18.55148 -17.86258 -17.06202 -16.63475 -16.35152 -15.69035 -15.56133 -14.97837 -14.75443 -13.79086 -13.27386 -12.95932 -12.81412 -12.26322 -11.94150 -11.79556 -11.69305 -11.46223 -11.42147 -11.30771 -10.41353 -10.15314 -9.77383 -7.18964 -1.27869 0.47943 0.58485 1.05264 1.47399 1.51779 1.84057 2.13781 2.20036 2.73915 3.27479 3.76314 4.07945 4.23086 4.37200 4.61777 4.75641 4.91533 4.95741 5.17163 5.34467 5.45970 5.57263 5.81817 6.00992 6.50885 6.96626 7.15896 Molecular weight = 209.05amu Principal moments of inertia in cm(-1) A = 0.049334 B = 0.009123 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.428960 B = 3068.531436 C = 3538.031022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C -0.012 4.012 3 Si 1.128 2.872 4 H -0.268 1.268 5 H -0.247 1.247 6 H -0.239 1.239 7 C -0.283 4.283 8 H 0.143 0.857 9 C -0.006 4.006 10 C -0.179 4.179 11 C -0.045 4.045 12 C -0.119 4.119 13 N 0.045 4.955 14 O -0.398 6.398 15 O -0.395 6.395 16 C -0.083 4.083 17 C 0.041 3.959 18 O -0.482 6.482 19 H 0.312 0.688 20 H 0.138 0.862 21 H 0.121 0.879 22 H 0.124 0.876 23 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 12.473 -3.766 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.244 4.244 3 Si 0.939 3.061 4 H -0.192 1.192 5 H -0.171 1.171 6 H -0.162 1.162 7 C -0.307 4.307 8 H 0.160 0.840 9 C -0.011 4.011 10 C -0.201 4.201 11 C -0.065 4.065 12 C -0.229 4.229 13 N 0.437 4.563 14 O -0.533 6.533 15 O -0.530 6.530 16 C -0.103 4.103 17 C -0.008 4.008 18 O -0.293 6.293 19 H 0.128 0.872 20 H 0.156 0.844 21 H 0.139 0.861 22 H 0.141 0.859 23 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.391 13.952 -4.093 16.788 hybrid contribution -0.300 -2.888 0.656 2.977 sum 8.091 11.064 -3.437 14.131 Atomic orbital electron populations 1.70039 1.09684 1.36404 1.14648 1.31039 0.95206 1.07790 0.90350 0.82881 0.74988 0.67229 0.80967 1.19229 1.17062 1.16204 1.23718 1.01836 0.91979 1.13167 0.83975 1.19478 0.94784 0.92727 0.94078 1.20861 1.00994 0.96867 1.01402 1.20118 0.98239 0.89841 0.98267 1.19660 1.08191 0.82269 1.12830 1.50012 1.01243 1.03682 1.01322 1.96014 1.74707 1.10953 1.71609 1.96015 1.27350 1.95242 1.34424 1.20603 0.95831 0.99495 0.94347 1.19273 0.96360 0.89385 0.95784 1.84612 1.17745 1.94938 1.32009 0.87250 0.84432 0.86119 0.85853 0.74390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -23.72 12.31 23.23 0.29 -23.43 14 2 C -0.01 -0.36 5.14 87.24 0.45 0.09 14 3 Si 1.13 22.51 30.09 68.60 2.06 24.57 14 4 H -0.27 -5.82 7.11 99.48 0.71 -5.11 14 5 H -0.25 -4.53 7.11 99.48 0.71 -3.83 14 6 H -0.24 -4.10 7.11 99.48 0.71 -3.39 14 7 C -0.28 -9.02 9.01 24.81 0.22 -8.79 14 8 H 0.14 3.75 7.87 -2.91 -0.02 3.72 14 9 C -0.01 -0.22 5.52 -19.93 -0.11 -0.33 14 10 C -0.18 -7.17 7.96 22.57 0.18 -6.99 14 11 C -0.04 -2.04 9.44 21.95 0.21 -1.84 14 12 C -0.12 -6.07 6.89 36.52 0.25 -5.82 14 13 N 0.04 2.63 4.98 -46.12 -0.23 2.40 14 14 O -0.40 -24.42 19.08 3.51 0.07 -24.36 14 15 O -0.40 -24.16 19.07 3.51 0.07 -24.10 14 16 C -0.08 -3.79 9.50 22.34 0.21 -3.58 14 17 C 0.04 1.63 6.94 24.58 0.17 1.80 14 18 O -0.48 -15.64 12.99 -85.23 -1.11 -16.75 14 19 H 0.31 11.56 6.69 -92.71 -0.62 10.93 14 20 H 0.14 5.09 6.46 -2.91 -0.02 5.07 14 21 H 0.12 5.46 7.50 -2.91 -0.02 5.43 14 22 H 0.12 5.69 7.51 -2.91 -0.02 5.67 14 23 H 0.40 8.53 9.06 -74.06 -0.67 7.86 14 Total: -1.00 -64.23 225.34 3.47 -60.76 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.74 Total: 26.36 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 1.58 Total: -25.46 kcal Atomic # 7 Polarization: -21.09 SS G_CDS: 0.06 Total: -21.03 kcal Atomic # 8 Polarization: -64.23 SS G_CDS: -0.97 Total: -65.20 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: 2.06 Total: 24.57 kcal Total: -64.23 3.47 -60.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238704513.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.721 kcal (2) G-P(sol) polarization free energy of solvation -64.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds