Wall clock time and date at job start Mon Mar 30 2020 02:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.53000 * 109.46769 * 66.05138 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99611 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00327 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99743 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46828 * 90.00241 * 9 7 5 11 11 H 1.48494 * 109.47178 * 209.99936 * 9 7 5 12 12 H 1.48500 * 109.47075 * 330.00183 * 9 7 5 13 13 C 1.46903 * 110.99788 * 236.05051 * 2 1 3 14 14 C 1.50702 * 109.46939 * 293.95226 * 13 2 1 15 15 C 1.40890 * 126.29270 * 269.68925 * 14 13 2 16 16 C 1.34842 * 107.41834 * 179.83174 * 15 14 13 17 17 N 1.36343 * 108.21843 * 0.43222 * 16 15 14 18 18 H 0.97001 * 125.63785 * 179.75825 * 17 16 15 19 19 C 1.34848 * 126.28787 * 90.00345 * 14 13 2 20 20 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 21 21 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 23 23 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 24 24 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 25 25 H 1.09001 * 109.47194 * 299.99524 * 4 3 2 26 26 H 1.08992 * 109.47399 * 59.99697 * 4 3 2 27 27 H 0.97000 * 120.00354 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47188 * 53.95311 * 13 2 1 29 29 H 1.08993 * 109.47221 * 173.95234 * 13 2 1 30 30 H 1.08001 * 126.28563 * 359.96606 * 15 14 13 31 31 H 1.08002 * 125.89315 * 180.15992 * 16 15 14 32 32 H 1.08001 * 125.89533 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1711 3.4645 1.3181 6 1 2.7190 3.8325 0.4633 7 6 1.9650 4.2820 2.4091 8 7 1.2973 3.8339 3.4498 9 14 2.6344 6.0259 2.4091 10 1 1.6174 6.9464 1.8402 11 1 2.9489 6.4354 3.8014 12 1 3.8689 6.0823 1.5857 13 6 1.9954 -0.7659 -1.1377 14 6 1.6369 -2.2204 -0.9730 15 6 2.4102 -3.2013 -0.3212 16 6 1.7316 -4.3643 -0.3939 17 7 0.5722 -4.1394 -1.0751 18 1 -0.1039 -4.8056 -1.2754 19 6 0.5197 -2.8234 -1.4275 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.5611 1.9274 -0.8309 24 1 3.0797 1.3444 -0.1083 25 1 0.5472 2.0844 1.4266 26 1 2.0658 1.5014 2.1492 27 1 1.1520 4.4091 4.2172 28 1 1.5610 -0.3871 -2.0629 29 1 3.0796 -0.6610 -1.1758 30 1 3.3691 -3.0491 0.1517 31 1 2.0533 -5.3115 0.0131 32 1 -0.2792 -2.3461 -1.9758 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258853339.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:10 Heat of formation + Delta-G solvation = 44.698599 kcal Electronic energy + Delta-G solvation = -13176.855100 eV Core-core repulsion = 10945.103409 eV Total energy + Delta-G solvation = -2231.751692 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.89097 -36.88713 -33.09059 -31.42045 -29.59996 -28.50307 -26.67475 -24.91961 -22.37208 -20.61594 -19.74978 -19.09846 -17.81365 -16.34438 -14.88906 -14.50950 -14.43349 -13.73248 -13.63641 -13.49056 -12.99581 -12.53874 -12.10389 -12.03505 -11.55958 -11.18576 -10.95154 -10.84004 -10.73625 -10.47736 -9.74507 -9.32006 -9.04896 -8.51622 -8.25704 -7.98433 -7.47812 -5.92408 -3.94417 2.41362 3.16329 3.36657 3.42639 3.46251 3.46566 4.50620 4.93647 5.22235 5.29531 5.43287 5.56260 5.56679 5.89254 6.02470 6.07787 6.17600 6.31437 6.44546 6.54314 6.64150 6.66788 7.08979 7.15371 7.29302 7.67569 7.68984 7.75240 7.92279 8.02439 8.19746 8.52722 9.13352 9.68693 11.19088 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.076613 B = 0.005497 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.387117 B = 5092.834685 C = 5118.828818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.536 5.536 3 C 0.063 3.937 4 C 0.028 3.972 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.123 3.877 14 C -0.144 4.144 15 C -0.178 4.178 16 C -0.027 4.027 17 N -0.565 5.565 18 H 0.410 0.590 19 C -0.019 4.019 20 H 0.013 0.987 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.017 0.983 24 H 0.059 0.941 25 H 0.016 0.984 26 H 0.024 0.976 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.159 0.841 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 -14.473 -9.341 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.260 5.260 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.005 4.005 14 C -0.152 4.152 15 C -0.204 4.204 16 C -0.157 4.157 17 N -0.160 5.160 18 H 0.245 0.755 19 C -0.150 4.150 20 H 0.031 0.969 21 H 0.076 0.924 22 H 0.092 0.908 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.176 0.824 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.634 -14.741 -8.765 17.228 hybrid contribution -0.295 1.082 -0.681 1.312 sum -1.928 -13.659 -9.446 16.718 Atomic orbital electron populations 1.22364 0.88416 1.00638 1.00623 1.62059 1.07447 1.15281 1.41249 1.22349 0.98502 0.85355 1.00199 1.19095 0.96870 0.93907 0.91111 1.21226 1.34973 0.97843 1.01864 0.92821 1.24992 0.95375 0.98395 0.95574 1.69977 1.40996 1.36306 1.06078 0.86609 0.79323 0.84976 0.77164 1.20771 1.21243 1.19886 1.20397 0.99749 0.88674 0.91718 1.19450 0.95965 0.95412 1.04324 1.20838 1.01530 0.92182 1.05807 1.21765 0.88985 1.00207 1.04768 1.41895 1.18804 1.09559 1.45731 0.75450 1.21634 1.01430 0.83843 1.08081 0.96866 0.92355 0.90818 0.96440 0.92217 0.96526 0.95729 0.93073 0.95460 0.90727 0.84820 0.82357 0.82556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.09 60.07 0.55 1.06 16 2 N -0.54 -10.61 4.75 -244.36 -1.16 -11.77 16 3 C 0.06 1.40 4.90 -3.82 -0.02 1.38 16 4 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 5 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 6 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 9 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.12 2.04 5.46 -4.97 -0.03 2.01 16 14 C -0.14 -2.17 5.03 -104.82 -0.53 -2.70 16 15 C -0.18 -2.54 10.81 -39.78 -0.43 -2.97 16 16 C -0.03 -0.31 11.94 -16.75 -0.20 -0.51 16 17 N -0.56 -5.85 6.07 -12.85 -0.08 -5.93 16 18 H 0.41 2.77 8.96 -40.82 -0.37 2.41 16 19 C -0.02 -0.24 10.38 -16.75 -0.17 -0.41 16 20 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 21 H 0.06 0.95 6.10 -51.93 -0.32 0.64 16 22 H 0.07 1.49 6.47 -51.93 -0.34 1.16 16 23 H 0.02 0.39 8.12 -51.93 -0.42 -0.04 16 24 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 25 H 0.02 0.47 6.55 -51.93 -0.34 0.13 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.07 1.22 7.93 -51.93 -0.41 0.80 16 30 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 268.75 15.07 4.05 4.05 Total: -1.00 -32.64 268.75 -7.53 -40.17 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.68 Total: -1.33 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.38 Total: -15.41 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.50 Total: -44.53 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.64 -7.53 -40.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258853339.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.873 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds