Wall clock time and date at job start Mon Mar 30 2020 02:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.53000 * 109.46769 * 66.05138 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99611 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00327 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99743 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46828 * 90.00241 * 9 7 5 11 11 H 1.48494 * 109.47178 * 209.99936 * 9 7 5 12 12 H 1.48500 * 109.47075 * 330.00183 * 9 7 5 13 13 C 1.46903 * 110.99788 * 236.05051 * 2 1 3 14 14 C 1.50702 * 109.46939 * 293.95226 * 13 2 1 15 15 C 1.40890 * 126.29270 * 269.68925 * 14 13 2 16 16 C 1.34842 * 107.41834 * 179.83174 * 15 14 13 17 17 N 1.36343 * 108.21843 * 0.43222 * 16 15 14 18 18 H 0.97001 * 125.63785 * 179.75825 * 17 16 15 19 19 C 1.34848 * 126.28787 * 90.00345 * 14 13 2 20 20 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 21 21 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 23 23 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 24 24 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 25 25 H 1.09001 * 109.47194 * 299.99524 * 4 3 2 26 26 H 1.08992 * 109.47399 * 59.99697 * 4 3 2 27 27 H 0.97000 * 120.00354 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47188 * 53.95311 * 13 2 1 29 29 H 1.08993 * 109.47221 * 173.95234 * 13 2 1 30 30 H 1.08001 * 126.28563 * 359.96606 * 15 14 13 31 31 H 1.08002 * 125.89315 * 180.15992 * 16 15 14 32 32 H 1.08001 * 125.89533 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1711 3.4645 1.3181 6 1 2.7190 3.8325 0.4633 7 6 1.9650 4.2820 2.4091 8 7 1.2973 3.8339 3.4498 9 14 2.6344 6.0259 2.4091 10 1 1.6174 6.9464 1.8402 11 1 2.9489 6.4354 3.8014 12 1 3.8689 6.0823 1.5857 13 6 1.9954 -0.7659 -1.1377 14 6 1.6369 -2.2204 -0.9730 15 6 2.4102 -3.2013 -0.3212 16 6 1.7316 -4.3643 -0.3939 17 7 0.5722 -4.1394 -1.0751 18 1 -0.1039 -4.8056 -1.2754 19 6 0.5197 -2.8234 -1.4275 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.5611 1.9274 -0.8309 24 1 3.0797 1.3444 -0.1083 25 1 0.5472 2.0844 1.4266 26 1 2.0658 1.5014 2.1492 27 1 1.1520 4.4091 4.2172 28 1 1.5610 -0.3871 -2.0629 29 1 3.0796 -0.6610 -1.1758 30 1 3.3691 -3.0491 0.1517 31 1 2.0533 -5.3115 0.0131 32 1 -0.2792 -2.3461 -1.9758 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258853339.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:09 Heat of formation + Delta-G solvation = 22.352762 kcal Electronic energy + Delta-G solvation = -13177.824089 eV Core-core repulsion = 10945.103409 eV Total energy + Delta-G solvation = -2232.720680 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.85073 -38.46649 -35.20719 -32.83034 -31.17225 -29.74250 -28.09104 -26.78050 -24.13029 -21.59611 -21.55804 -20.12141 -18.80360 -18.52944 -16.53537 -16.41204 -16.06216 -15.12985 -14.77371 -14.48233 -14.41798 -14.09732 -13.88988 -13.39260 -13.14012 -12.84959 -12.79845 -12.51422 -12.31099 -12.11585 -11.76565 -11.32456 -11.23142 -10.52198 -9.54707 -9.12032 -8.85751 -8.17727 -6.29448 1.41299 1.43590 1.46980 1.54872 2.07792 2.43008 2.65208 3.15335 3.43269 4.19563 4.32995 4.39654 4.49590 4.51906 4.59541 4.68585 4.80733 4.84557 5.02805 5.05901 5.14426 5.32518 5.48583 5.57997 5.69983 5.81955 6.10972 6.14526 6.29430 6.40813 6.41721 6.88019 6.94039 7.39586 8.94677 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.076613 B = 0.005497 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.387117 B = 5092.834685 C = 5118.828818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.552 5.552 3 C 0.079 3.921 4 C 0.036 3.964 5 C -0.545 4.545 6 H 0.061 0.939 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.262 1.262 13 C 0.128 3.872 14 C -0.179 4.179 15 C -0.218 4.218 16 C -0.011 4.011 17 N -0.549 5.549 18 H 0.430 0.570 19 C -0.013 4.013 20 H 0.025 0.975 21 H 0.080 0.920 22 H 0.044 0.956 23 H 0.021 0.979 24 H 0.061 0.939 25 H -0.006 1.006 26 H -0.011 1.011 27 H 0.264 0.736 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.193 0.807 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 -15.061 -10.551 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.277 5.277 3 C -0.049 4.049 4 C -0.001 4.001 5 C -0.583 4.583 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.187 1.187 13 C 0.000 4.000 14 C -0.186 4.186 15 C -0.243 4.243 16 C -0.143 4.143 17 N -0.146 5.146 18 H 0.269 0.731 19 C -0.145 4.145 20 H 0.043 0.957 21 H 0.098 0.902 22 H 0.063 0.937 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.012 0.988 26 H 0.007 0.993 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.143 0.857 31 H 0.210 0.790 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.834 -15.365 -10.000 18.425 hybrid contribution -0.265 1.156 -0.297 1.222 sum -2.099 -14.210 -10.297 17.674 Atomic orbital electron populations 1.22284 0.87617 1.01733 0.99702 1.61979 1.08350 1.13711 1.43624 1.21994 0.98638 0.86854 0.97388 1.18922 0.94995 0.93691 0.92508 1.21648 1.35356 0.98888 1.02424 0.92108 1.25990 0.95404 1.03384 0.94944 1.70121 1.42110 1.38273 1.06860 0.85400 0.79035 0.78806 0.77499 1.19653 1.20695 1.18654 1.20349 0.99367 0.89550 0.90712 1.19433 0.97783 0.94655 1.06742 1.20998 1.02164 0.93570 1.07533 1.22194 0.88391 1.00521 1.03145 1.41923 1.18870 1.09349 1.44422 0.73060 1.21861 1.00893 0.84581 1.07213 0.95676 0.90163 0.93735 0.96065 0.92084 0.98759 0.99291 0.92766 0.94369 0.91263 0.85699 0.79048 0.80561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.27 9.09 127.69 1.16 2.43 16 2 N -0.55 -22.04 4.75 -927.03 -4.41 -26.45 16 3 C 0.08 3.58 4.90 86.30 0.42 4.01 16 4 C 0.04 2.05 4.90 29.85 0.15 2.19 16 5 C -0.54 -32.26 9.11 25.60 0.23 -32.03 16 6 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.00 0.03 5.46 84.66 0.46 0.49 16 8 N -0.93 -58.69 13.29 21.45 0.28 -58.40 16 9 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.13 4.18 5.46 85.56 0.47 4.65 16 14 C -0.18 -5.19 5.03 -19.99 -0.10 -5.29 16 15 C -0.22 -6.02 10.81 22.14 0.24 -5.78 16 16 C -0.01 -0.23 11.94 83.21 0.99 0.77 16 17 N -0.55 -9.62 6.07 -194.56 -1.18 -10.80 16 18 H 0.43 4.16 8.96 -92.71 -0.83 3.33 16 19 C -0.01 -0.29 10.38 83.21 0.86 0.57 16 20 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.08 2.53 6.10 -2.38 -0.01 2.52 16 22 H 0.04 1.86 6.47 -2.39 -0.02 1.84 16 23 H 0.02 0.94 8.12 -2.39 -0.02 0.92 16 24 H 0.06 2.72 7.93 -2.39 -0.02 2.70 16 25 H -0.01 -0.35 6.55 -2.39 -0.02 -0.37 16 26 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 27 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 29 H 0.07 2.28 7.93 -2.39 -0.02 2.26 16 30 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -71.14 268.75 1.88 -69.26 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.27 Total: 7.09 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 4.89 Total: -28.00 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -5.30 Total: -95.65 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.14 1.88 -69.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258853339.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.617 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds